Pinned Repositories
detecting-spectra-differences
Working project for methods of detecting size-spectra differences and comparing across methods.
ds-pipeline-demo
junkR
personal R package of Jim Junker
NEON-mesocosm-experiment
2022 Summer Experiment
new_manuscipt_project
This is a template repository to create a new Rstudio project for workflow for data cleaning --> manuscript creation.
Primer-of-Ecology
Second edition of "Primer of Ecology with R"
secpRod
Function workflow for secondary production estimation of animal populations
jimjunker1's Repositories
jimjunker1/academic-kickstart
jimjunker1/advanced-vegan-webinar-july-2020
Delve deeper into using R and vegan to analyse complex multivariate community ecology data with this free webinar
jimjunker1/cxr
Tools to measure coexistence across species.
jimjunker1/dietr
Diet Estimated Trophic Levels in R: Estimates fractional trophic level from diet and food item data records in R.
jimjunker1/docker-example
A repository to teach scientists how to use Docker
jimjunker1/dynsbm
:exclamation: This is a read-only mirror of the CRAN R package repository. dynsbm — Dynamic Stochastic Block Models. Homepage: http://lbbe.univ-lyon1.fr/dynsbm
jimjunker1/ECODAS-DOM
jimjunker1/EcoStoic
Repository for working manuscript on environmental drivers of ecosystem organic matter stoichiometry and the relative impact of intra- and inter-specific processes.
jimjunker1/EML
Ecological Metadata Language interface for R: synthesis and integration of heterogenous data
jimjunker1/Evenness
jimjunker1/Final-insect-abundance-changes
This is the repository for the final analysis used in Van Klink et al 2020 Meta-analysis reveals declines in terrestrial but increases in freshwater insect abundances. With this code all analyses in the paper can be reproduced, and the graphs, except the maps, can be remade. Code to calculate the values of the dots on the map is provided. These values can then be plotted on any map. ##WARNING: Each INLA model requires some 200GB RAM to run, and produces an object of 100 - 400MB in size. Analyses should thus be performed on a high performance computer, and the processing of the results is limited by the capacity of the local machine. In our experience at least 10 models can be loaded in R at a time. ###The files in this repository are: Full INLA analysis FINAL cleaned 20191230 - this will reproduce the analayses using the file DataS1 and DataS2 from the online supplementary material of the paper. For processing 5 datasets that precluded publication of the derived numbers in DataS1 and DataS2: dataSource_ID 1339: These data are avialable at https://belovskylab.nd.edu/assets/231833/nbr_grasshopper_density.pdf The column 'DENSITY' of each site was used as input DataSource_ID 1416: These data are available at: http://data.hubbardbrook.org/data/dataset.php?id=82 to process these data use: 'LTER Hubbard Book data processing.r' DataSource_ID 1404: the original data can be downloaded here: https://data.g-e-m.dk/ use the Zackenberg insect monitoring data. To process this file use the code 'Greenland data processing revised dec 2019.r'. Only data until including 2017 were used. The years 2010 and 2011 were excuded. DataSource_ID's 1474 and 1475: The derived numbers for are available at https://knb.ecoinformatics.org/view/urn:uuid:4ac97c2d-d3af-4430-96d4-0873b98e8aa8
jimjunker1/fishflux
A package to model elemental fluxes in fish
jimjunker1/Growth-curve-fitting
Fitting von Bertalanffy based growth parameterisations to data
jimjunker1/insect-declines_comment
jimjunker1/Junker-et-al_TempIndependenceSecProd
This repostiory contains data and code used in Junker et al. XXXX published in XXXX
jimjunker1/Junker_Warming-foodwebs
Public repository for the
jimjunker1/LDATS
Latent Dirichlet Allocation coupled with Bayesian Time Series analyses
jimjunker1/LFEM
A new methodology for length frequency analysis
jimjunker1/mar_sims
Simulation-fitting exercises for MAR(1), MARSS(1), and TVVARSS(1) models.
jimjunker1/MATSS
R Package for Macroecological Analysis of Time Series Structure (MATSS)
jimjunker1/metacommunity-analysis-script
jimjunker1/metacommunity_simulator
jimjunker1/mixed-effect-gams
Repo for tutorial/paper on mixed-effect GAMs
jimjunker1/personal-website
Code that'll help you kickstart a personal website that showcases your work as a software developer.
jimjunker1/public-proj_fcl-synchrony
Code for: Spatial disturbance synchrony alters the association of food chain length and ecosystem size
jimjunker1/reconciling_coexistence
jimjunker1/Temp_effect_trophic-_interaction
Clone of repository: Azenor/Temp_effect_trophic _interaction
jimjunker1/temperature_independence
jimjunker1/virtual-summit-2020
jimjunker1/Windows10Debloater
Script to remove Windows 10 bloatware.