Pinned Repositories
201603_BioinfoHub_HPC
ABACBS_workshop_prep
ACAD-BioinfoResume-July2022
aDNA_nextflow
BIOTECH-7005-BIOINF-3000
gammytools
gammytools for Bioinformatics
jimmybgammyknee.github.io
Personal blog and github io page
modules
Module files for Nextflow workflows
RaScALL
uofaBioWDL
UofA BioWDL genomic workflows
jimmybgammyknee's Repositories
jimmybgammyknee/uofaBioWDL
UofA BioWDL genomic workflows
jimmybgammyknee/RaScALL
jimmybgammyknee/ABACBS_workshop_prep
jimmybgammyknee/gammytools
gammytools for Bioinformatics
jimmybgammyknee/jimmybgammyknee.github.io
Personal blog and github io page
jimmybgammyknee/modules
Module files for Nextflow workflows
jimmybgammyknee/201603_BioinfoHub_HPC
jimmybgammyknee/ACAD-BioinfoResume-July2022
jimmybgammyknee/aDNA_nextflow
jimmybgammyknee/BIOTECH-7005-BIOINF-3000
jimmybgammyknee/earlyPlacentaRnaSeqProfile
Early to mid gestation RNA-seq analysis for (Breen et al. 2020)
jimmybgammyknee/epicsa-july2022
jimmybgammyknee/EpiCSA_Methylation_June2016
DNA methylation hands-on tutorial for the Epigenetics Consortium of South Australia's (EpiCSA) Bioinformatics workshop
jimmybgammyknee/FeatureCount2GCT
This is a script to convert the output from FeatureCount to GCT format expression tables
jimmybgammyknee/granulosa_PR_ChIPseq
Scripts from the analysis of the granulosa PR/H3K27ac ChIPseq for Dinh et al. 2018
jimmybgammyknee/introAssemPneu
Assembly of Strep pneum
jimmybgammyknee/mapPlots
Plots for ancient genomics
jimmybgammyknee/marp-cli-example
The good starter for using Marp via Marp CLI, by the author of Marp
jimmybgammyknee/md-cv
markdown cv / résumé built with jekyll
jimmybgammyknee/mgi-demultiplex-umi
jimmybgammyknee/microarray_analysis_in_R
For BSc (advanced) final year placement students
jimmybgammyknee/nf-rnaseq-sagc
RNAseq quantification pipeline
jimmybgammyknee/podmur_lizard_analysis
lizard analysis for transcript assembly and quant
jimmybgammyknee/sahmri-maxquant-hpc
scripts to run maxquant on sahmri-hpc
jimmybgammyknee/tasks
jimmybgammyknee/workflows-wdl
standard wdl/cwl workflows - SAHMRI/ABMC