/AnceTran

AnceTran2.0: R package for transcriptome evolution analysis based on RNA-seq expression data or ChIP-seq TF-binding data

Primary LanguageR

title author date output
README
Jingw Yang
2018/01/30
md_document

AnceTran

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AnceTran is an R package that performs analyses of transcriptome evolution based on RNA-seq expression data or ChIP-seq TF binding data, including optimized input formatting, normalization and pair-wise distance evaluation, transcriptome character tree construction and ancestral transcriptome state inference.

AnceTran package is under active developing, current developing version 2.0 is available at https://github.com/jingwyang/AnceTran.

A convenient way to install package from github is through devtools package:

install.packages('devtools')
devtools::install_github("jingwyang/AnceTran")

Users can also download AnceTran package and install locally through:

install.packages("filePath/AnceTran.2.0.tar.gz", repos = NUll, type = "source")