jingxinfu
Research fellow @vanallenlab at Dana-Farber Cancer Institute and the Broad Institute of MIT & Harvard.
Dana-Farber Cancer InstituteBoston, MA
Pinned Repositories
Bioplots
Visualize genomic analysis results for bioinformatians and computational biologist
Biopyutils
Provide common functions for bioinformatics
cs231n
Notes and assignment for the cs231n course taught by Dr. Fei Fei Li
hr_brca_single_cell
primary_hr_brca_io_treated_genomic_analysis
seuratToAdata
Convert seurat obj to adata in scanpy
TCGAdnloader
TCGA hg19 and hg38 data downloader.
TIDEpy
TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade in Python.
WebCrawlerLearning
Practice on web crawling
jingxinfu's Repositories
jingxinfu/TIDEpy
TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade in Python.
jingxinfu/WebCrawlerLearning
Practice on web crawling
jingxinfu/Bioplots
Visualize genomic analysis results for bioinformatians and computational biologist
jingxinfu/TCGAdnloader
TCGA hg19 and hg38 data downloader.
jingxinfu/hr_brca_single_cell
jingxinfu/primary_hr_brca_io_treated_genomic_analysis
jingxinfu/Biopyutils
Provide common functions for bioinformatics
jingxinfu/seuratToAdata
Convert seurat obj to adata in scanpy
jingxinfu/cs231n
Notes and assignment for the cs231n course taught by Dr. Fei Fei Li
jingxinfu/DEGpy
A python toolkit to mimic DESeq2 and edgR R packages (Model learning purpose)
jingxinfu/infercnvpy
Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.
jingxinfu/Machine_Learning
python class for machine learning
jingxinfu/paperSummary
paper summary for lab
jingxinfu/seaborn
Statistical data visualization using matplotlib