jinseob2kim/jstable

Error in `dplyr::bind_rows()` when there are three variables for subgroup analysis

Closed this issue · 4 comments

zheng-gt commented

Hello, I got the following error when I ran the code below. Could you please tell me how to fix it?

Error

Error in dplyr::bind_rows():
! Can't combine ..1$P value and ..2$P value .
Run rlang::last_trace() to see where the error occurred.

Code
library(dplyr)
lung %>%
mutate(
status = as.integer(status == 1),
sex = factor(sex),
kk = factor(as.integer(pat.karno >= 70)),
kk1 = factor(as.integer(pat.karno >= 80)),
kk2 = factor(as.integer(pat.karno >= 90))
) -> lung

TableSubgroupMultiGLM(status ~ sex,
var_subgroups = c("kk", "kk1", "kk2"),
var_cov = c("kk", "kk1", "kk2"),
data = lung, line = TRUE, family = "binomial"
)

hyungwoo-jo commented

This error occurred because, in version 1.3.4, there were cases where the p-value was returned as both a list and a character. I have submitted a pull request to fix this issue. Once the request is merged, you can update the jstable package from GitHub. Thank you for your suggestion.

zheng-gt commented

@sl-eeper Thank you for your quick response! I appreciate your great contribution.

jinseob2kim commented

Sorry, Could you try install the latest version via remotes::install_github("jinseob2kim/jstable")

zheng-gt commented

@jinseob2kim I have installed the latest version; it works correctly now! Thank you very much for this great package! Also, many thanks to @sl-eeper for pulling the request.

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