A biogeochemical modeling library spins off the ecosys model.
git clone --recursive git@github.com:jinyun1tang/EcoSIM.git
make config CC=icc CXX=icpc FC=ifort
make install CC=icc CXX=icpc FC=ifort
Find the executable under ./local/bin/ecosim.f90.x
make test CC=icc CXX=icpc FC=ifort F90=1
will check if the code is downloaded properly. (Hower, because compiler difference, tests may fail.)
For gnu compilers, change icc, icpc and ifort into gcc, g++ and gfortran, respectively.
It is recommended you have the netcdf library installed on your system for C, C++ and fortran. For mac, this can be done through either macport of homebrew.
If a system provided netcdf libraray is provided. Use the following
make config CC=icx CXX=icpc FC=ifort netcdfsys=1
to config, and use
make install CC=icx CXX=icpc FC=ifort netcdfsys=1
to build.
There is another approach when your system does not have netcdf support. Assume using gnu compiler, first do
make stage CC=gcc CXX=g++ FC=gfortran
then
make config CC=gcc CXX=g++ FC=gfortran netcdfsys=1
and
make install CC=gcc CXX=g++ FC=gfortran netcdfsys=1
read the Makefile.
Examples can be found in examples/run_dir. To run the example, for instance, dryland, goes to dryland, then type
../../../local/bin/ecosim.f90.x dryland.namelist
and output can be found at dryland_maize_outputs.