/protViz

Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics

Primary LanguageR

protViz - Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics

Documentation

The package ships with two pdf vignettes.

vignette('protViz')
vignette('PTM_MarkerFinder')

Installation

CRAN

install.packages('protViz')

from github

install the latest development version

install.packages('devtools')
library(devtools)
install_git('https://github.com/protViz/protViz', build_vignettes = TRUE, quiet = FALSE)
library(protViz)

Docker

docker pull cpanse/protviz \
&& docker run -d -p 8792:8787 cpanse/protviz

connect to http://yourdockerhost:8791 using a web browser

  • username: rstudio
  • password: rstudio

Documentation

The package ships with a package vignette (browseVignettes('protViz') and a reference manual (just type ?protViz on the R shell).

Both documents are also available on the package's CRAN page.

Related approaches

Research software impact