jjaa-mp

desertsHomo

Brain expression of genes under selection in *Homo sapiens* within introgression deserts

MultiLayered_IndirectNeuro

single-cell-tutorial

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

3utr_humanevolution

bigSCale2

Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data

rna-seq-tsne

The art of using t-SNE for single-cell transcriptomics

salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

seurat

R toolkit for single cell genomics

Temporal-mapping

A repository of all the data, observations, code and plots for the Fine-grained temporal mapping article

jjaa-mp/MultiLayered_IndirectNeuro

jjaa-mp/desertsHomo

Brain expression of genes under selection in *Homo sapiens* within introgression deserts

jjaa-mp/3utr_humanevolution

jjaa-mp/salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

jjaa-mp/rna-seq-tsne

The art of using t-SNE for single-cell transcriptomics

jjaa-mp/scanpy

Single-Cell Analysis in Python. Scales to >1M cells.

jjaa-mp/single-cell-tutorial

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

jjaa-mp/bigSCale2

Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data

jjaa-mp/seurat

R toolkit for single cell genomics