Pinned Repositories
generalization-manuscript
mpmp
Multimodal Pan-cancer Mutation Prediction
optimizer-manuscript
pancancer-evaluation
Evaluating genome-wide prediction of driver mutations using pan-cancer data
analytics-stuff
Random sports analytics stuff
Azimuth
My fork of Azimuth (Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency)
biopriors-review
A literature review of biologically regularized/constrained machine learning models
fasta-handler
Lightweight parser for FASTA-formatted sequence files
jake_dissertation
jjc2718.github.io
jjc2718's Repositories
jjc2718/fasta-handler
Lightweight parser for FASTA-formatted sequence files
jjc2718/jake_dissertation
jjc2718/jjc2718.github.io
jjc2718/analytics-stuff
Random sports analytics stuff
jjc2718/Azimuth
My fork of Azimuth (Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency)
jjc2718/biopriors-review
A literature review of biologically regularized/constrained machine learning models
jjc2718/deep-correlation
Playing "Guess the Correlation" using neural networks
jjc2718/dotfiles
Some of my Linux config files
jjc2718/dsNickFury3PlusOrchid
dsNickFury is for comparing a CRISPR target site against all other potential sites in a genome. Orchid is a package I'm developing to go with it for iterative CRISPR analysis over an exome.
jjc2718/gene-graph-conv
Towards Gene Expression Convolutions using Gene Interaction Graphs
jjc2718/generalization-manuscript
jjc2718/generic-expression-patterns
Distinguishing between generic and experiment-specific gene expression signals.
jjc2718/GitHub_Automation_for_Scientists
A course that introduces Github actions to developers of scientific worklflows and software
jjc2718/greenelab.com
The website source code for greenelab.com
jjc2718/linear_models_manuscript
jjc2718/MONET
MONET : MOdularising NEtwork Toolbox - doi: https://doi.org/10.1101/611418
jjc2718/mpmp
Multimodal Pan-cancer Mutation Prediction
jjc2718/mpmp-manuscript
jjc2718/mutation-fn
Analysis of false negatives from mutation prediction classifiers
jjc2718/netscape
Exploring the network/pathway regularization landscape for gene expression data
jjc2718/optimizer-manuscript
jjc2718/pancancer-evaluation
Evaluating genome-wide prediction of driver mutations using pan-cancer data
jjc2718/random-strings
jjc2718/sim-netdata
Simulating data with network covariance structure
jjc2718/stratified-vs-random
jjc2718/transfertools
Python toolbox for transfer learning.
jjc2718/utilities
Helpful utility code/functions