Pinned Repositories
airflow
Apache Airflow - A platform to programmatically author, schedule, and monitor workflows
AutoR2RML
bakta
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
biom-format
The Biological Observation Matrix (BIOM) Format Project
biotea
RDF as an Interface to scientific publications
carveme
CarveMe: genome-scale metabolic model reconstruction
CMOD
Web application for viewing microbial genomic data from Wikidata
jjkoehorst's Repositories
jjkoehorst/airflow
Apache Airflow - A platform to programmatically author, schedule, and monitor workflows
jjkoehorst/bakta
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
jjkoehorst/biom-format
The Biological Observation Matrix (BIOM) Format Project
jjkoehorst/carveme
CarveMe: genome-scale metabolic model reconstruction
jjkoehorst/cwltool
Common Workflow Language reference implementation
jjkoehorst/cwltool-bck
Common Workflow Language reference implementation
jjkoehorst/docs
Documentation for The Things Network
jjkoehorst/enaBrowserTools
A collection of scripts to assist in the retrieval of data from the ENA Browser
jjkoehorst/hassos-addons
Home Assistant Add-ons
jjkoehorst/jupyter-book
Create beautiful, publication-quality books and documents from computational content.
jjkoehorst/linkml
Linked Open Data Modeling Language
jjkoehorst/memote-docker
Easily use the memote command line interface from a docker container.
jjkoehorst/mixs
Minimum Information about any (X) Sequence” (MIxS) specification
jjkoehorst/mixs-source
jjkoehorst/nfdi4microbiota-knowledge-base
The NFDI4Microbiota Knowledge Base
jjkoehorst/pygenprop
A python library for programmatic usage of EBI InterPro Genome Properties.
jjkoehorst/read_docs
jjkoehorst/rpi-vision
Tools and examples for getting started with object detection + classification tasks on Raspberry Pi, using Tensorflow 2.0 and Keras. READ ME FIRST: https://medium.com/@grepLeigh/portable-computer-vision-tensorflow-2-0-on-a-raspberry-pi-part-1-of-2-84e318798ce9
jjkoehorst/runcrate
http://www.researchobject.org/runcrate/
jjkoehorst/samsa2
SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customizable reference databases.
jjkoehorst/scheduled-bots
GeneWiki Scheduled Bots
jjkoehorst/seek
For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.
jjkoehorst/shexer
jjkoehorst/shexpy.io
Web app for shex in python / flask
jjkoehorst/tascu_data
jjkoehorst/user_guide
The CWL v1.0 user guide
jjkoehorst/wikibase-docker
🐳 Docker images and compose file for Wikibase and the query service
jjkoehorst/Wikibase-Stakeholder-Group.github.io
Website of the Wikibase Stakeholder Group
jjkoehorst/wikibase_languages
jjkoehorst/WikidataIntegrator
A Wikidata Python module integrating the MediaWiki API and the Wikidata SPARQL endpoint