#FASTA2SELFDOT#
fasta2selfdot.pl
##TITLE##
fasta2selfdot
##DESCRIPTION##
Script takes a multi-FASTA or FASTQ file input and breaks it up into single sequence files, then runs self-by-self dot plots with Gepard http://http://www.helmholtz-muenchen.de/icb/software/gepard/index.html
Outputs all single-sequence FASTA files into directory "./seq", and dot plots go into "./dot".
##PREREQUISITES##
- Gepard (http://www.helmholtz-muenchen.de/icb/software/gepard/index.html)
- Bioperl (http://www.biperl.org)
##USAGE##
fasta2selfdot.pl -i /path/to/sequence.fasta
###Options###
-i : /path/to/input/seqfile
##AUTHOR##
Joey Karalius https://github.com/jkaralius
##ISSUES##