Pinned Repositories
Pub_S1AngleCode
AllenSDK
code for reading and processing Allen Institute for Brain Science data
Analysis_angle_coding_in_vS1
Analysis codes for "angle coding in vS1" paper. All in MATLAB
angle-discrimination-behavior
Scripts for characterizing behavior in novel angle discrimination task for Kim et al., 2020
ca_source_extraction
Matlab implementation of a source extraction and spike inference algorithm for large scale calcium imaging data analysis, based on a constrained matrix factorization approach.
CalciumSignalExtract
Extract regions of interest based on correlated pixel intensity
casignal
calcium signal analysis
jksbx
supplementary files for scanbox by jkim
jkSuite2p_match_all_sessions
Using suite2p to match all sessions from the same imaging plane
jkWhisker
HLab whisker analysis
jkim0731's Repositories
jkim0731/Analysis_angle_coding_in_vS1
Analysis codes for "angle coding in vS1" paper. All in MATLAB
jkim0731/jkSuite2p_match_all_sessions
Using suite2p to match all sessions from the same imaging plane
jkim0731/AllenSDK
code for reading and processing Allen Institute for Brain Science data
jkim0731/angle-discrimination-behavior
Scripts for characterizing behavior in novel angle discrimination task for Kim et al., 2020
jkim0731/ca_source_extraction
Matlab implementation of a source extraction and spike inference algorithm for large scale calcium imaging data analysis, based on a constrained matrix factorization approach.
jkim0731/CalciumSignalExtract
Extract regions of interest based on correlated pixel intensity
jkim0731/casignal
calcium signal analysis
jkim0731/jksbx
supplementary files for scanbox by jkim
jkim0731/jkWhisker
HLab whisker analysis
jkim0731/constrained-foopsi
Implementation of the constrained deconvolution spike inference algorithm in Matlab
jkim0731/continuous_time_ca_sampler
The code takes as an input a time series vector of calcium observationsand produces samples from the posterior distribution of the underlying spike in continuous time.
jkim0731/ExperPortHLabTrainingBoxes
Behavior protocols and analysis
jkim0731/GitExample
jkim0731/gitgoing
Get going with contributing to open source software
jkim0731/jkArduino
arduino codes for behaviors and light control
jkim0731/jkISI
HLab ISI
jkim0731/jkRTWT
codes for real-time whisker tracker
jkim0731/jkSolo
behavior running & analysis
jkim0731/jkTools
miscellaneous tools downloaded and made
jkim0731/Neural-stretching-in-vS1
Analysis codes for ensemble activity change in vS1 across angle discrimination learning
jkim0731/oopsi
up-to-date code for model-based inference of spike trains from calcium imaging
jkim0731/Pub_S1AngleCode
jkim0731/ROI_detect
Automatic ROI Detection
jkim0731/scikit-learn
scikit-learn: machine learning in Python
jkim0731/session-matching-2p
conversion of 2p images for session matching project
jkim0731/spgl1
A solver for large-scale sparse reconstruction
jkim0731/suite2p
cell detection in calcium imaging recordings
jkim0731/test
test
jkim0731/tools
jkim0731/Useful-Matlab-Functions
A collection of useful Matlab functions that are useful for most situations. Keep these on your path