Assess unique parental contribution to multiparent RILs
usage: mpp_percentages.py [-h] --variants VARIANTS --progeny-substring PROGENY_SUBSTRING --parent-substrings PARENT_SUBSTRINGS
[--subset-size SUBSET_SIZE] [--output OUTPUT] [--multiallelic]
This script was designed to find the percent representation of parents in a set of recombinant progeny based on unique variants
optional arguments:
-h, --help show this help message and exit
--subset-size SUBSET_SIZE
Number of SNPs for subset bar plot.
--output OUTPUT File name for bar plot.
--multiallelic Indicator for biallelic variants or not.
required arguments:
--variants VARIANTS The name of the input file (CSV). File structure: R qtl2 genotype format
--progeny-substring PROGENY_SUBSTRING
The substring present in all progeny
--parent-substrings PARENT_SUBSTRINGS
The substrings present in each parent -- comma separated RIL Example
MAGIC Example
