Pinned Repositories
angsd_genotyping_workflow
Pipeline based on ANGSD tools for genotypes calling
chromonomer_workflow
Workflow for the improvement of genetic maps and genome assemblies based on Chromonomer tools
epigenetic_wgenome_workflow
Pipeline for DNA methylation and genetic polymorphism analysis from RRBS data
epigenetics_workflow
Pipeline for RRBS data analysis without a reference genome
genome_annotation_workflow
Genome annotation : Tools compilation
lepmap2_workflow
Pipeline for linkage map construction from NGS data
pathview_workflow
Quick workflow for KEGG pathways visualization in R using Pathview
rna-seq_denovo_workflow
Pipeline for transcriptome de novo assembly
rna-seq_mapping_workflow
Pipeline for RNAseq data analysis based on reference genome
wgcna_workflow
Analysis of co-expression networks from RNA-seq data
jleluyer's Repositories
jleluyer/lepmap2_workflow
Pipeline for linkage map construction from NGS data
jleluyer/rna-seq_denovo_workflow
Pipeline for transcriptome de novo assembly
jleluyer/wgcna_workflow
Analysis of co-expression networks from RNA-seq data
jleluyer/epigenetics_workflow
Pipeline for RRBS data analysis without a reference genome
jleluyer/pathview_workflow
Quick workflow for KEGG pathways visualization in R using Pathview
jleluyer/rna-seq_mapping_workflow
Pipeline for RNAseq data analysis based on reference genome
jleluyer/angsd_genotyping_workflow
Pipeline based on ANGSD tools for genotypes calling
jleluyer/genome_annotation_workflow
Genome annotation : Tools compilation
jleluyer/epigenetic_wgenome_workflow
Pipeline for DNA methylation and genetic polymorphism analysis from RRBS data
jleluyer/metatranscriptomics_workflow
Pipeline for analyses of bacterial metatranscriptomics data
jleluyer/abc_inferences
jleluyer/acclimabest
Acclimatation du bénitier et ses symbiontes à la température - Labex Corail
jleluyer/circos_plot
circos plot with OmicCircos package
jleluyer/epigenetics_multifactor_workflow
Pipeline for WGBS analysis with multifactorial experimental designs
jleluyer/gatk_workflow
jleluyer/gawn
GAWN (Genome Annotation Without Nightmares)
jleluyer/github_presentation
quick workshop
jleluyer/permutation2randomforest
Tool for permutating factors in genomic datasets and run Random Forest analysis
jleluyer/scripts
jleluyer/sibship_SNPpanel
Sibship reconstruction from SNP panel genotyping
jleluyer/stacks_workflow
Workflow to work with RAD/GBS data in STACKS
jleluyer/Transcriptome_Pmargaritifera
jleluyer/barque
An environmental DNA metabarcoding analysis pipeline
jleluyer/gamma
Labex Mer - Corail : Adaptation et plasticité de la réponse à la température chez Pinctada margaritifera : écotypes des Gambiers et des Marquises
jleluyer/genome_assembly
Pipeline for genome assembly using hybrid sequencing strategy
jleluyer/network_analysis
Pipeline for implementing graph theory in connectivity data
jleluyer/PFR_snapper
Transcriptome assembly, differential expression and WGCNA for the Australasian snapper (Chrysophrys auratus)
jleluyer/quanapa-larvDev
RNA-seq time series of larval development in Pinctada margaritifera
jleluyer/signet
jleluyer/slim2randomforest
Pipeline for simple simulations and detection of co-varying markers