Pinned Repositories
bigg_models
The BiGG Models website server
bigg_models_data
The flat files for the BiGG Models website
cameo
cameo - computer aided metabolic engineering & optimization
cobradb
COBRAdb
cobrame
A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
cobrapy_main
COBRApy is a package for constraints-based modeling of biological networks
component-contribution
Standard reaction Gibbs energy estimation for biochemical reactions
DnaWeaver
A route planner for DNA assembly
ecolime
Data and tools necessary to construct iJL1678b-ME, a genome-scale model of E. coli K-12 MG1655 metabolism and expression
escher
Build, view, share, and embed metabolic maps.
jlerman44's Repositories
jlerman44/escher
Build, view, share, and embed metabolic maps.
jlerman44/bigg_models
The BiGG Models website server
jlerman44/bigg_models_data
The flat files for the BiGG Models website
jlerman44/cameo
cameo - computer aided metabolic engineering & optimization
jlerman44/cobradb
COBRAdb
jlerman44/cobrame
A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
jlerman44/cobrapy_main
COBRApy is a package for constraints-based modeling of biological networks
jlerman44/component-contribution
Standard reaction Gibbs energy estimation for biochemical reactions
jlerman44/DnaWeaver
A route planner for DNA assembly
jlerman44/ecolime
Data and tools necessary to construct iJL1678b-ME, a genome-scale model of E. coli K-12 MG1655 metabolism and expression
jlerman44/evSeq
Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.
jlerman44/keras
Deep Learning library for Python. Convnets, recurrent neural networks, and more. Runs on Theano or TensorFlow.
jlerman44/Mutation_Maker
Application for mutagenic primer design. Facilitates development of biocatalysts (Green Chemistry) and new therapeutic proteins.
jlerman44/optlang
optlang - sympy based mathematical programming language
jlerman44/psi-ms-CV
HUPO-PSI mass spectrometry CV
jlerman44/pydna
Double stranded DNA & simulation of homologous recombination, Gibson assembly, cut&paste cloning in Python and Jupyter notebooks
jlerman44/pyms
Automatically exported from code.google.com/p/pyms
jlerman44/pyms-docs
Automatically exported from code.google.com/p/pyms-docs
jlerman44/pyms-test
Automatically exported from code.google.com/p/pyms-test
jlerman44/ucsd-thesis
an effort to create the canonical LaTeX style for typesetting UCSD doctoral dissertations