Pinned Repositories
.dotfiles
Activation-Energy-Estimation-Workflow
A workflow to estimate activation free energy for a protein structure obtained from a coarse-grained simulation
alan
Alignment viewer for linux terminal
alignmentviewer
Multiple sequence alignment visualizer
alphafold_singularity
Open source code for AlphaFold.
An-Introduction-To-Applied-Bioinformatics
Interactive lessons in bioinformatics.
ancestralSeq
Python framework for doing ancestral sequence reconstruction
art-of-command-line
Master the command line, in one page
ausbiowebsite
Use example theme to make website
bibliography
jlingford's Repositories
jlingford/.dotfiles
jlingford/alignmentviewer
Multiple sequence alignment visualizer
jlingford/alphafold_singularity
Open source code for AlphaFold.
jlingford/ancestralSeq
Python framework for doing ancestral sequence reconstruction
jlingford/art-of-command-line
Master the command line, in one page
jlingford/ausbiowebsite
Use example theme to make website
jlingford/bibliography
jlingford/BIOS1140.github.io
pop gen tutes
jlingford/cg_simtk_protein_folding
A toolkit for building CG model of protein/ribosome and MD simulation protocols for protein co- and post-translational folding
jlingford/computational_biology_lectures
course material
jlingford/dotfiles
My dot files and config settings
jlingford/graphein
Protein Graph Library
jlingford/hgdp_tgp
Human genome resource and tutorials
jlingford/hugo-PaperMod-fork
A fast, clean, responsive Hugo theme.
jlingford/LiorCompBioCourse
Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
jlingford/manim
Animation engine for explanatory math videos
jlingford/MelBioInf_tutorials
Melbourne Bioinformatics documentation in markdown format
jlingford/mod-hugo-theme-bootstrap
A fast, responsive, multipurpose and feature-rich Hugo theme.
jlingford/modified-hugo-blog
Fork of Hugo blog awesome, adding my own modifications
jlingford/neovim-config
jlingford/openVectorEditor
Teselagen's Open Source Vector/Plasmid Editor Component
jlingford/personal-website
jlingford/pydata-book
Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media
jlingford/Python-programming-exercises
100+ Python challenging programming exercises
jlingford/PythonDataScienceHandbook
Python Data Science Handbook: full text in Jupyter Notebooks
jlingford/RFdiffusion
Code for running RFdiffusion
jlingford/rifdock
Rifdock Library for Conformational Search
jlingford/telescope-bibtex.nvim
A telescope.nvim extension to search and paste bibtex entries into your TeX files.
jlingford/tiny_python_projects
Code for Tiny Python Projects (Manning, 2020, ISBN 1617297518). Learning Python through test-driven development of games and puzzles.
jlingford/torchmd-protein-thermodynamics
Tutorials and data necessary to reproduce the results of publication Machine Learning Coarse-Grained Potentials of Protein Thermodynamics