jlt3

Scientist at the Frederick National Lab for Cancer Research PhD - Florida State University 2023

Frederick National Lab for Cancer ResearchFrederick, MD

Pinned Repositories

dcHiC
dcHiC: Differential compartment analysis for Hi-C datasets
Language:R00
ERCEs_2023
Scripts from Turner et al 2023 "Master transcription factor binding sites are necessary for early replication control element activity"
Language:Shell00
genmat
GENomic MATrices in R
Language:R00
MACS
MACS -- Model-based Analysis of ChIP-Seq
Language:Cython00
NGSscripts
Scripts for processing NGS data
Language:Shell00
SNPsplit
Allele-specific alignment sorting
Language:Perl00
TrimGalore
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
Language:Perl00

jlt3's Repositories

jlt3/dcHiC
dcHiC: Differential compartment analysis for Hi-C datasets
Language:R00
jlt3/ERCEs_2023
Scripts from Turner et al 2023 "Master transcription factor binding sites are necessary for early replication control element activity"
Language:Shell00
jlt3/genmat
GENomic MATrices in R
Language:R00
jlt3/MACS
MACS -- Model-based Analysis of ChIP-Seq
Language:Cython00
jlt3/NGSscripts
Scripts for processing NGS data
Language:Shell00
jlt3/SNPsplit
Allele-specific alignment sorting
Language:Perl00
jlt3/TrimGalore
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
Language:Perl00