Pinned Repositories
callgraph
Tool for printing call graphs
cl-buchberger
Buchberger's algorithm in Common Lisp. Moved to https://git.sr.ht/~jmbr/cl-buchberger
diffusion-maps
Fast computation of diffusion maps and geometric harmonics in Python. Moved to https://git.sr.ht/~jmbr/diffusion-maps
halberd
Load balancer detection tool. Moved to https://git.sr.ht/~jmbr/halberd
incf-cl
A collection of convenience functions and macros for Common Lisp. Moved to https://git.sr.ht/~jmbr/incf-cl
laplace-beltrami-eigensolver
Calculates the eigendecomposition of the Laplace-Beltrami operator on charts of Riemannian manifolds. Moved to https://git.sr.ht/~jmbr/laplace-beltrami-eigensolver
lbfgs
L-BFGS Software for Large-scale Unconstrained Optimization by Jorge Nocedal
libeve
Genetic algorithm library written in C. Moved to https://git.sr.ht/~jmbr/libeve
libpme6
C++ implementation of the smooth Particle-Mesh Ewald algorithm for dispersive forces. Moved to https://git.sr.ht/~jmbr/libpme6
maxima-interface
Simple interface between Common Lisp and Maxima. Moved to https://git.sr.ht/~jmbr/maxima-interface
jmbr's Repositories
jmbr/halberd
Load balancer detection tool. Moved to https://git.sr.ht/~jmbr/halberd
jmbr/diffusion-maps
Fast computation of diffusion maps and geometric harmonics in Python. Moved to https://git.sr.ht/~jmbr/diffusion-maps
jmbr/libeve
Genetic algorithm library written in C. Moved to https://git.sr.ht/~jmbr/libeve
jmbr/incf-cl
A collection of convenience functions and macros for Common Lisp. Moved to https://git.sr.ht/~jmbr/incf-cl
jmbr/libpme6
C++ implementation of the smooth Particle-Mesh Ewald algorithm for dispersive forces. Moved to https://git.sr.ht/~jmbr/libpme6
jmbr/maxima-interface
Simple interface between Common Lisp and Maxima. Moved to https://git.sr.ht/~jmbr/maxima-interface
jmbr/cl-buchberger
Buchberger's algorithm in Common Lisp. Moved to https://git.sr.ht/~jmbr/cl-buchberger
jmbr/callgraph
Tool for printing call graphs
jmbr/laplace-beltrami-eigensolver
Calculates the eigendecomposition of the Laplace-Beltrami operator on charts of Riemannian manifolds. Moved to https://git.sr.ht/~jmbr/laplace-beltrami-eigensolver
jmbr/lbfgs
L-BFGS Software for Large-scale Unconstrained Optimization by Jorge Nocedal
jmbr/go-replicants
Molecular simulator for proteins that uses Go-type potentials
jmbr/dfftpack
A repackaging of DFFTPACK providing C/C++ header files and ready to be built using CMake.
jmbr/gnostic
Rule-based task execution system. Moved to https://git.sr.ht/~jmbr/gnostic
jmbr/baoab-constraints
Code for numerical experiments using Langevin Dynamics with constraints
jmbr/cl-mpi
Fork of cl-mpi by M. Heisig. This fork provides bindings for the full MPI specification. Moved to https://git.sr.ht/~jmbr/cl-mpi
jmbr/committor
Solver for the committor equation using the finite element method. Uses FEniCS and a potential of mean force obtained by colvars.
jmbr/eigensolver
Library for computing eigenvectors of large sparse matrices using ARPACK and SuiteSparse
jmbr/miles
Milestoning tool
jmbr/sbcl-notes
Notes written while working my way through the sources of SBCL.
jmbr/staying-the-course-code
jmbr/colvars-gaussian-processes
Use Gaussian processes as collective variables in molecular simulations with NAMD. Moved to https://git.sr.ht/~jmbr/colvars-gaussian-processes
jmbr/gentlest_ascent_dynamics_on_manifolds
Gentlest ascent dynamics on manifolds
jmbr/inferior-maple-mode
Simple Maple command-line interface for Emacs
jmbr/jmbr
jmbr/lambda-dynamics-quadrature
Model system for validating lambda dynamics implementations. Moved to https://git.sr.ht/~jmbr/lambda-dynamics-quadrature
jmbr/latex2anki
Convert decks of flashcards written in LaTeX to Anki. Moved to https://git.sr.ht/~jmbr/latex2anki
jmbr/make-project
Boilerplate generator for Common Lisp projects
jmbr/regex-trace
Trace macro with regular expression support
jmbr/school-on-molecular-kinetics
Jupyter notebooks prepared for the CECAM School on Molecular Kinetics in Lausanne, Switzerland (August 2016)
jmbr/simple-milestoning
Simple example of Milestoning