jmdelahanty
A neuroscientist trying to get a degree from Baltimore, collecting big behavior and brain data at HHMI Janelia. Zebrafish are neat little dudes.
HHMI JaneliaAshburn, VA
Pinned Repositories
ahrens_rotation
Analyzing_Neural_Time_Series
python implementations of Analyzing Neural Time Series Textbook
bruker_control
Repository for code running the lab's multi-photon imaging experiments at the Bruker Ultima Investigator scope. Unites Arduino, Prairie View, and GenTL machine cameras in Python.
multifactory
resources
PyMC3 educational resources
scienceishard
bruker_control
Repository for code running the lab's multi-photon imaging experiments at the Bruker Ultima Investigator scope. Unites Arduino, Prairie View, and GenTL machine cameras in Python.
jmdelahanty's Repositories
jmdelahanty/bruker_control
Repository for code running the lab's multi-photon imaging experiments at the Bruker Ultima Investigator scope. Unites Arduino, Prairie View, and GenTL machine cameras in Python.
jmdelahanty/ahrens_rotation
jmdelahanty/Analyzing_Neural_Time_Series
python implementations of Analyzing Neural Time Series Textbook
jmdelahanty/autopilot
Distributed behavioral experiments
jmdelahanty/bruker_pipeline
Python implementation of data processing pipeline for data from the Bruker Ultima microscope in conjunction with bruker_control.
jmdelahanty/compress-multiphoton
Compression for multiphoton calcium imaging movies and stacks
jmdelahanty/multifactory
jmdelahanty/scienceishard
jmdelahanty/daisy
Block-wise task scheduling for large nD volumes.
jmdelahanty/datajoint-python
Relational data pipelines for the science lab
jmdelahanty/datashuttle
Tool for the creation, validation and transfer of neuroscience project folders.
jmdelahanty/docker-stacks
Ready-to-run Docker images containing Jupyter applications
jmdelahanty/DongLab
Repository for code generated for Dr. Xinzhong Dong's lab.
jmdelahanty/hhmi_summer
Workbooks for some basic coding tutorials with members of Janelia Meyerhoff Scholars
jmdelahanty/jhu_statsforlabscientists
Statistics Course in JHU SPH
jmdelahanty/lab-programming-workshop
A workshop for lab meeting about some basics of best practices for writing scientific code!
jmdelahanty/lablogging
Computers have logs fro doing lots of things. It'd be kinda cool if scientists had that too.
jmdelahanty/learn_cpp
jmdelahanty/learning_cpp
Learning some C++ for Johnson Lab @ Janelia
jmdelahanty/ln2f
Metadata generation for animals, experiments, equipment, and reagents.
jmdelahanty/mastodon
A glitchy but lovable microblogging server
jmdelahanty/NeuroBlueprint
Lightweight data specification for systems neuroscience, inspired by BIDS.
jmdelahanty/nwb_hackathons
Repository for collecting materials from nwb hackathons
jmdelahanty/pain-pipeline
Cool pain pipeline, would be epic to throw facial expressions at this...
jmdelahanty/pynwb
A Python API for working with Neurodata stored in the NWB Format
jmdelahanty/sleap
A deep learning framework for multi-animal pose tracking.
jmdelahanty/sleap_benchmarking
Benchmarking Dr. Talmo Pereira's SLEAP in the Tye Lab
jmdelahanty/stuffiwanttouse
jmdelahanty/tifffile
Read and write TIFF files. Forked from https://pypi.org/project/tifffile
jmdelahanty/tweets
janky twitter replacement.