/rna_sec

Ruby library for representing RNA secondary structures as tree data structures. (Unmaintained.)

Primary LanguageRubyMIT LicenseMIT

RNASec ↑

RNASec is a library for representing RNA secondary structures as tree data structures.

Usage ↑

To “evolve back” to the MBE1A tree, execute

$ bin/ga -d data/mbe1a.ct

For available options, execute

$ bin/ga -h

Requirements ↑

Ruby 1.9 is required. If you wish to run unit tests, you will need to follow these steps:

# Install `bundler':
$ gem install bundler

# Install all dependencies:
$ bundle install

Then you can test and develop:

# Run tests:
$ rake test

# Documentation:
$ rake yard

# Coverage/stats:
$ rake rcov

Author ↑

Jon-Michael Deldin <jon-michael.deldin@umontana.edu>