jmschrei/bpnet-lite

Issues

• VRAM issues in ChromBPNet.fit

  #13 opened 5 months ago by adamyhe
  1

• Calling hits with FiNeMo / marginalize?

  #12 opened 6 months ago by gregorydonahue
  2

• Question: does BPNet code support any seq length?

  #1 opened a year ago by vitkl
  22

• ATAC-seq pre-processing: shifting tags

  #11 opened 6 months ago by gregorydonahue
  2

• Error in running bpnet negatives / tangermeme match.py issues

  #10 opened 6 months ago by gregorydonahue
  4

• Reasonable values for beta parameter in ATAC-seq chrombpnet run

  #6 opened 7 months ago by gregorydonahue
  3

• Practical limit on # input peaks

  #7 opened 7 months ago by gregorydonahue
  2

• Mislabeling of functions from bpnetlite.io in the example code for Python API

  #9 opened 7 months ago by Renee-Napoliello
  1

• output dtype error in bpnet negatives

  #8 opened 7 months ago by adamyhe
  2

• Error in printing model loaded from chrombpnet package

  #4 opened 7 months ago by adamklie
  0

• bpnetlite.attributions.dinucleotide_shuffle errors out when there is less than 4 nucleotides in the sequence

  #3 opened a year ago by gokceneraslan
  5

• TOMTOM missed

  #2 opened a year ago by wang3702
  4