Pinned Repositories
ashlar
auto-minerva
bayessb
dnd1
DND1
mailman-archive-migration
Tools to assist in exporting MailMan archives, e.g. to Google Groups
minerva-hybrid-render-test
deck.gl Hybrid Render Test
ome-tiff-pyramid-tools
Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.
ome-types
native Python dataclasses for the OME data model
jmuhlich's Repositories
jmuhlich/auto-minerva
jmuhlich/omero-oauth
OMERO.web application to allow OAuth2 login to OMERO
jmuhlich/ashlar
jmuhlich/pysb
Python framework for Systems Biology modeling
jmuhlich/ome-tiff-pyramid-tools
Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.
jmuhlich/analysis_notebooks
jmuhlich/ashlar-paper-figures
jmuhlich/BaSiCPy
jmuhlich/basicpy-docker-mcmicro
jmuhlich/bioformats
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
jmuhlich/cod038-plate-registration
jmuhlich/cylinter
An Interactive Image Segmentation Filter for Multiplex Microscopy
jmuhlich/htan-orator
Natural language descriptions of HTAN metadata
jmuhlich/it-vuln-reports
jmuhlich/ji2024
jmuhlich/lsp-minerva-tutorial
jmuhlich/mal
mal - Make a Lisp
jmuhlich/mcmicro
An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
jmuhlich/mcmicro-legacy
Nextflow prototype for mcmicro
jmuhlich/minerva-author
Tool to create images and configuration files for Minerva-Story
jmuhlich/mist_evaluation
jmuhlich/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
jmuhlich/multiload-ng
Modern graphical system monitor for any panel
jmuhlich/nf-test
Simple test framework for Nextflow pipelines
jmuhlich/ome-omero-roitool
OME and OMERO ROI tool
jmuhlich/prelude
Prelude is an enhanced Emacs 25.1+ distribution that should make your experience with Emacs both more pleasant and more powerful.
jmuhlich/quantification
Quantification module for mcmicro
jmuhlich/rt_import
jmuhlich/UnMicst
UNet script, model, sample data
jmuhlich/zz_scripts