Pinned Repositories
ColorDeconvolutionMatlab
A Matlab implementation of Ruifrok's color deconvolution algorithm.
deep-stroma-histology
Convolutional neural networks for extracting a "deep stroma score" from histological images of human cancer
DeepHistology
A pan-cancer platform for mutation prediction from routine histology
histoGAN
Generative adversarial networks for histology images
histology-multiclass-texture
Texture analysis in colorectal cancer histology
histopathology-snippets
Code snippets for histopathology.
immuneTopography
Analyze topography of tumor-infiltrating immune cells in histological images (QuPath/Matlab)
immuno_literature
Cancer immunotherapy literature analysis (PubMed papers and registered clinical trials)
immunoABM
an agent-based model of tumor cell - immune cell interactions
MSIfromHE
predict microsatellite status from hematoxylin-eosin histology of gastrointestinal cancer
jnkather's Repositories
jnkather/MSIfromHE
predict microsatellite status from hematoxylin-eosin histology of gastrointestinal cancer
jnkather/DeepHistology
A pan-cancer platform for mutation prediction from routine histology
jnkather/ColorDeconvolutionMatlab
A Matlab implementation of Ruifrok's color deconvolution algorithm.
jnkather/deep-stroma-histology
Convolutional neural networks for extracting a "deep stroma score" from histological images of human cancer
jnkather/histology-multiclass-texture
Texture analysis in colorectal cancer histology
jnkather/histopathology-snippets
Code snippets for histopathology.
jnkather/immuno_literature
Cancer immunotherapy literature analysis (PubMed papers and registered clinical trials)
jnkather/histoGAN
Generative adversarial networks for histology images
jnkather/immunoABM
an agent-based model of tumor cell - immune cell interactions
jnkather/immuneTopography
Analyze topography of tumor-infiltrating immune cells in histological images (QuPath/Matlab)
jnkather/new-colors-histology
Source codes for: "New colors for histology: optimized bivariate color maps increase perceptual contrast in histological images"
jnkather/immunoABM3D
3D agent-based model of human colorectal cancer
jnkather/labs
Scripts for the PH525x: Data Analysis for Genomics
jnkather/new-colors-histology-website
This is the website for our project on bivariate colormaps in histopathology
jnkather/qupath
QuPath - Open Source Digital Pathology
jnkather/AngiogenicZone
Distribution analysis of CD34-stained blood vessels in histopathological whole slide images
jnkather/bacteria-plot
Parallel coordinates plot of clinically relevant bacteria
jnkather/color-mri
Color-based visualization of multiparametric MRI data
jnkather/imagenebula
Automatically exported from code.google.com/p/imagenebula
jnkather/VirusFromHE
Detecting virus presence in hematoxylin and eosin histology images