Pinned Repositories
APPSR
APPSR: automated preprocessing pipeline for meta-analysis of small RNA sequencing data.
bioinfo_toolbox
Bioinformatic recipes for high-throughput sequencing datasets
cross-species-contam-check
Code I used for checking cross-species contamination
DNApi
De novo adapter prediction algorithm for small RNA sequencing data
fiss
FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine
heatlogo
Sequence Logos for nucleotide, amino acid, and codon sequences with color-coded symbols
junko_utils
Junko's script utils
neoag-tools
Phasing and translation modules for neoantigen analysis
norg-suite
Detection of organelle DNA insertions in nuclear genomes
trim-suppl_BIB100115
Three read trimming scripts
jnktsj's Repositories
jnktsj/DNApi
De novo adapter prediction algorithm for small RNA sequencing data
jnktsj/norg-suite
Detection of organelle DNA insertions in nuclear genomes
jnktsj/trim-suppl_BIB100115
Three read trimming scripts
jnktsj/neoag-tools
Phasing and translation modules for neoantigen analysis
jnktsj/APPSR
APPSR: automated preprocessing pipeline for meta-analysis of small RNA sequencing data.
jnktsj/bioinfo_toolbox
Bioinformatic recipes for high-throughput sequencing datasets
jnktsj/cross-species-contam-check
Code I used for checking cross-species contamination
jnktsj/fiss
FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine
jnktsj/heatlogo
Sequence Logos for nucleotide, amino acid, and codon sequences with color-coded symbols
jnktsj/junko_utils
Junko's script utils
jnktsj/jutil
Single cell util repo
jnktsj/reTERM
Summarize and reduce the number of functional terms
jnktsj/strelka_vcf_script
part of the CGA pipeline
jnktsj/tag_work