Utilities for performing biomarker survival analyses (e.g. cox proportional hazards, kaplan-meier, etc) from TCGA, CBioPortal, and other datasets
Installation and use of this package has been tested on Ubuntu and Mac OS X. In both cases, it has been most thoroughly tested using the Anaconda package manager.
To install Anaconda, follow instructions here
$ conda install -c r rpy2
$ pip install biomarker-survival
Please note that rpy2 has been deprecated, and so must be installed with Anaconda, not pip.
This package operates on data in the TCGA. For processed data, please see http://survival.cshl.edu