/neuron2obj

A simple tool for extracting volumetric data from Google Cloud Storage datasets as Wavefront (.obj) files.

Primary LanguagePython

Neuron2Obj

A tool for extracting neurons volumetric data from a Google Cloud Storage dataset as Wavefront (.obj) files.

USAGE

1. First, launch Neuroglancer and render a precomputed dataset.

Example:

precomputed://gs://h01-release/data/20210601/c3

2. Select your desired neuron(s).

Example:

5390777283,5535779437,6263276083,6614928166

3. Download'em!

Example:

 python3 neuron2obj.py precomputed://gs://h01-release/data/20210601/c3 5390777283,5535779437,6263276083,6614928166 --lod=1

NOTE: Aditional info can be obtained by running:

python3 neuron2obj.py --help