Pinned Repositories
1000-genomes
Annotations of SNPs identified in the 1000 Genomes Project
1000-genomes-genetic-maps
Genetic maps interpolated to sites in the 1000 Genomes project
fgwas
Functional genomics and genome-wide association studies
genome-server-21
Serve your genotypes and phenotypes via an API for satoshis
gwas-pw
Pariwise analysis of GWAS
ion-tree-list
Ionic directive for displaying nested list items.
malder
Automatically exported from code.google.com/p/malder
phenopredict21
Command line tool to predict phenotype from VCF (gets models from pheno-server-21)
pophistory-tutorial
Tutorial on using popular tools for learning about population history
xpehh
code for computing xp-ehh
joepickrell's Repositories
joepickrell/fgwas
Functional genomics and genome-wide association studies
joepickrell/pophistory-tutorial
Tutorial on using popular tools for learning about population history
joepickrell/gwas-pw
Pariwise analysis of GWAS
joepickrell/genome-server-21
Serve your genotypes and phenotypes via an API for satoshis
joepickrell/phenopredict21
Command line tool to predict phenotype from VCF (gets models from pheno-server-21)
joepickrell/ion-tree-list
Ionic directive for displaying nested list items.
joepickrell/ancestry-paper
joepickrell/GLIMPSE
Low Coverage Calling of Genotypes
joepickrell/phenoselect
Testing for selection on phenotypes
joepickrell/phenotypes
Phenotype prediction
joepickrell/1000g-server
test test test
joepickrell/2016-01-tennis-betting-analysis
Methodology and code supporting the BuzzFeed News/BBC article, "The Tennis Racket," published Jan. 17, 2016.
joepickrell/custom_db
Custom db script for DNA.land
joepickrell/Eagle
Haplotype phasing software
joepickrell/exac21
joepickrell/genome-client-21
joepickrell/GLPhase
A tool for phasing and imputing haplotypes in 10k+ low coverage sequencing samples
joepickrell/Graph-genotyping-paper-pipelines
Collection of Snakefile Python scripts for the variant discovery and genotyping pipelines in cattle
joepickrell/gvcftools
Utilities to create and analyze gVCF files
joepickrell/lift-over-vcf
UCSC liftOver (genome build converter) for vcf format
joepickrell/MarViN
joepickrell/Minimac3
Minimac3 is a low memory and computationally efficient implementation of the genotype imputation algorithms. Minimac3 is designed to handle very large reference panels in a more computationally efficient way with no loss of accuracy.
joepickrell/moloco
A tool for performing multiple-trait colocalization test using GWAS summary statistics
joepickrell/multisig-tool
Multisig Vault recovery tool
joepickrell/pbwt
Implementation of Positional Burrows-Wheeler Transform for genetic data
joepickrell/pheno-server-21
Server phenotype prediction models
joepickrell/pmliability
Estimate individual posterior mean liability of complex disease
joepickrell/PRJNA692319
joepickrell/rg-post
joepickrell/VCF-liftover
Liftover VCF files