johannesreiter

Assistant Professor at Stanford University Translational Cancer Evolution Laboratory

Stanford UniversityPalo Alto, California

Pinned Repositories

academicpages.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
Language:JavaScript0 1 00
AncesTree
An algorithm for clonal tree reconstruction from multi-sample cancer sequencing data
Language:C++00
bioauctions
Biological Auctions
Language:Jupyter Notebook0 2 01
bioinfo-combio
The rendered book can be found at https://liulab-dfci.github.io/bioinfo-combio/
Language:CSS1 1 00
LiFD
LiFD is a two-phase algorithm to predict likely functional driver (LiFD) mutations that integrates information from multiple databases and bioinformatic methods.
Language:Python21
pypipins
Badges for your site to display download totals, latest version using PyPI
Language:Python0 1 00
treeomics
See https://github.com/reiterlab/treeomics
1 2 00
ctdna
Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding
Language:Python10 3 05
rootdiversity
Jupyter notebooks to calculate the root diversity score (RDS)
Language:Jupyter Notebook0 2 00
treeomics
Decrypting somatic mutation patterns to reveal the evolution of cancer
Language:Python55 9 2515

johannesreiter/LiFD
LiFD is a two-phase algorithm to predict likely functional driver (LiFD) mutations that integrates information from multiple databases and bioinformatic methods.
Language:Python21
johannesreiter/bioinfo-combio
The rendered book can be found at https://liulab-dfci.github.io/bioinfo-combio/
Language:CSS1 1 00
johannesreiter/treeomics
See https://github.com/reiterlab/treeomics
1 2 00
johannesreiter/academicpages.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
Language:JavaScript0 1 00
johannesreiter/AncesTree
An algorithm for clonal tree reconstruction from multi-sample cancer sequencing data
Language:C++00
johannesreiter/bioauctions
Biological Auctions
Language:Jupyter Notebook0 2 01
johannesreiter/pypipins
Badges for your site to display download totals, latest version using PyPI
Language:Python0 1 00
johannesreiter/rootdiversity
See https://github.com/reiterlab/rootdiversity
2 0
johannesreiter/spruce
SPRUCE: Somatic Phylogeny Reconstruction using Combinatorial Enumeration
Language:C++
johannesreiter/Workshops
Workshop material
Language:Shell2 0