Johannesson Lab
Research group at the Department of Ecology, Environment and Plant Sciences (DEEP), Stockholm University
Sweden
Pinned Repositories
HetVPaper
Scripts and pipelines for the Ament et al. (2022) NEE paper on allorecognition genes and reproducive isolation
intermedia_spore_killer
Scripts released with the paper Svedberg et al. "Convergent evolution of complex genomic rearrangements in two fungal meiotic drive elements".
InvDeNovo
Python scripts for identifying inversions in fragmented de novo genome assemblies
johannessonlab.github.io
Repo hosting the Johannesson lab web page
Letharia
All scripts and pipelines related to inferring ploidy, hybridization and MAT locus architecture in the lichen symbionts from the genus Letharia
Marasmius_mutation_paper
Scripts used for the Marasmius oreades mutation paper by Hiltunen et al (in prep)
PodoHetsPaper
Scripts and pipelines of Ament et al. (prep) paper on het genes in the Podospora anserina species complex
sitophila_spore_killer
Scripts used in "An introgressed gene causes meiotic drive in Neurospora sitophila"
SpokBlockPaper
Scripts and snakemake pipelines associated with the Spok Block paper
SpokPaper
Scripts and snakemake pipelines associated with the paper of Vogan & Ament-Velasquez et al. "Combinations of Spok genes create multiple meiotic drivers in Podospora"
Johannesson Lab's Repositories
johannessonlab/InvDeNovo
Python scripts for identifying inversions in fragmented de novo genome assemblies
johannessonlab/johannessonlab.github.io
Repo hosting the Johannesson lab web page
johannessonlab/SpokBlockPaper
Scripts and snakemake pipelines associated with the Spok Block paper
johannessonlab/Letharia
All scripts and pipelines related to inferring ploidy, hybridization and MAT locus architecture in the lichen symbionts from the genus Letharia
johannessonlab/HetVPaper
Scripts and pipelines for the Ament et al. (2022) NEE paper on allorecognition genes and reproducive isolation
johannessonlab/intermedia_spore_killer
Scripts released with the paper Svedberg et al. "Convergent evolution of complex genomic rearrangements in two fungal meiotic drive elements".
johannessonlab/Marasmius_mutation_paper
Scripts used for the Marasmius oreades mutation paper by Hiltunen et al (in prep)
johannessonlab/PodoHetsPaper
Scripts and pipelines of Ament et al. (prep) paper on het genes in the Podospora anserina species complex
johannessonlab/sitophila_spore_killer
Scripts used in "An introgressed gene causes meiotic drive in Neurospora sitophila"
johannessonlab/SpokPaper
Scripts and snakemake pipelines associated with the paper of Vogan & Ament-Velasquez et al. "Combinations of Spok genes create multiple meiotic drivers in Podospora"