Pinned Repositories
contrasttransferfunction
A python library to model and estimate the contrast transfer function of transmission electron microscopy data
deco_lace_template_matching_manuscript
The manuscript describing Defocus Corrected Large Area cryo-EM (DeCo-LACE) for 2DTM
decolace
Scripts for acquiring DeCo-LACE data using SerialEM
napari-cistem
A napari plugin to inspect data within a cisTEM project
napari-decolace
pycistem
Python scripts inteacting with the cisTEM package
tempest
A ChimeraX plugin to visualize high-resolution template matching results from cisTEM
jojoelfe's Repositories
jojoelfe/deco_lace_template_matching_manuscript
The manuscript describing Defocus Corrected Large Area cryo-EM (DeCo-LACE) for 2DTM
jojoelfe/contrasttransferfunction
A python library to model and estimate the contrast transfer function of transmission electron microscopy data
jojoelfe/decolace
Scripts for acquiring DeCo-LACE data using SerialEM
jojoelfe/napari-cistem
A napari plugin to inspect data within a cisTEM project
jojoelfe/tempest
A ChimeraX plugin to visualize high-resolution template matching results from cisTEM
jojoelfe/napari-decolace
jojoelfe/pycistem
Python scripts inteacting with the cisTEM package
jojoelfe/affinder-drag
Quickly find the affine matrix mapping one image to another using manual correspondence points annotation
jojoelfe/cisTEM
jojoelfe/gcc-problem-matcher
Github Action to problem match gcc output
jojoelfe/cryoem-class
A test repository for a cryo-em class
jojoelfe/cryojax
Cryo electron microscopy image simulation and analysis built on JAX.
jojoelfe/decolace_web_viewer
jojoelfe/dsn6file
jojoelfe/imodmodel
IMOD model files as pandas dataframes in Python
jojoelfe/jojoelfe.github.io
jojoelfe/mdocfile
SerialEM mdoc files as pandas dataframes
jojoelfe/MolecularNodes
Addon and nodes for working with structural biology and molecular data in Blender.
jojoelfe/molintjs
jojoelfe/napari
napari: a fast, interactive, multi-dimensional image viewer for python
jojoelfe/napari-cistem-mtselector
jojoelfe/napari-cryofibsem-monitor
A plugin to monitor the creation of lamella using AutoTEM on a TFS Acquilos instrument
jojoelfe/necem2023
jojoelfe/ohsu_seminar
jojoelfe/pcdh15_tomo_talk
jojoelfe/posters
jojoelfe/readlif
Fast Leica LIF file reader written in python
jojoelfe/starfile
RELION STAR files as pandas DataFrames
jojoelfe/ttfsc
jojoelfe/webgl-ctf