Pinned Repositories
Adafruit_BNO055
Unified sensor driver for the Adafruit BNO055 orientation sensor breakout
dataPy
A generic conda virtual environment for data science.
DeepLabCut
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
elephant
Elephant is the Electrophysiology Analysis Toolkit
moseq2-ephys-sync
Tools for syncing Open Ephys data with video using IR LEDs
videochef
Whip up some video processing
jonahpearl's Repositories
jonahpearl/videochef
Whip up some video processing
jonahpearl/dataPy
A generic conda virtual environment for data science.
jonahpearl/DeepLabCut
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
jonahpearl/elephant
Elephant is the Electrophysiology Analysis Toolkit
jonahpearl/facemap
matlab/python GUI for unsupervised video analysis of rodent behavior (capable of processing multiple camera views)
jonahpearl/moseq2-ephys-sync
Tools for syncing Open Ephys data with video using IR LEDs
jonahpearl/gaitanalysis
Perform gait analysis on pose estimation files.
jonahpearl/gimbal
GIMBAL: GeometrIc Manifolds for Body Articulation and Localization
jonahpearl/huggingface_hub
All the open source things related to the Hugging Face Hub.
jonahpearl/JARVIS-AnnotationTool
AnnotationTool to create multi-view annotations for the JARVIS 3D Markerless Pose Estimation Toolbox
jonahpearl/jax-moseq
jonahpearl/keypoint-moseq
jonahpearl/mindscope_utilities
Utilities for loading, manipulating and visualizing data from the Allen Institute Mindscope program
jonahpearl/mkv-extract
simple tool to extract and compress data from mkv files that are written by k4arecorder
jonahpearl/mpl_serial_to_oscope
A utility to take continuous serial output (i.e. from an Arduino) and plot it in real-time with matplotlib
jonahpearl/multicam_airflow_pipeline
Multicamera analysis pipeline in Apache Airflow
jonahpearl/multicamera_acquisition
Synchronized machine vision acquisition across multiple cameras using an arduino (Supports FLIR and Basler)
jonahpearl/neuroconv
Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.
jonahpearl/NMA-course-content
NMA Computational Neuroscience course
jonahpearl/NMA_2022
Notebooks from NMA 2022
jonahpearl/pybasicbayes
jonahpearl/pyhsmm
jonahpearl/pyk4a_multicam
jonahpearl/SNUB
jonahpearl/sortingview
Web app for viewing results of ephys spike sorting
jonahpearl/spikeinterface
A Python-based module for creating flexible and robust spike sorting pipelines.
jonahpearl/TAD_python
The public (student) repo for TAD, python version
jonahpearl/timewizard
Your timeseries woes will magically disappear
jonahpearl/top-bottom-moseq
jonahpearl/zetapy
Python code implementing the ZETA-test