jonasjonker
I am a Bioinformatician, who likes to program and learn new languages from time to time.
InTrafficDriebergen-Rijsenburg, Netherlands
jonasjonker's Stars
PacificBiosciences/HiFiTargetEnrichment
A repo for the Twist HiFi capture/snakemake workflow
shenwei356/seqkit
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
plotly/plotly.py
The interactive graphing library for Python :sparkles: This project now includes Plotly Express!
plotly/Kaleido
Fast static image export for web-based visualization libraries with zero dependencies
AxlLind/AdventOfCode2022
Solutions to all 25 Advent of Code 2022 in Rust 🦀 Less than 100 lines per day, total runtime of less than 1 second.
zaeleus/noodles
Bioinformatics I/O libraries in Rust
Opentrons/opentrons-integration-tools
Guides and code snippets for integrating external devices with Opentrons
BioContainers/containers
Bioinformatics containers
simdjson/simdjson
Parsing gigabytes of JSON per second : used by Facebook/Meta Velox, the Node.js runtime, ClickHouse, WatermelonDB, Apache Doris, Milvus, StarRocks
asweigart/pyautogui
A cross-platform GUI automation Python module for human beings. Used to programmatically control the mouse & keyboard.
samtools/htslib
C library for high-throughput sequencing data formats
rust-bio/rust-htslib
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
samtools/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
epi2me-labs/modbam2bed
wdecoster/nanopack
An overview of all nanopack tools
nextflow-io/patterns
A curated collection of Nextflow implementation patterns
nextflow-io/awesome-nextflow
A curated list of nextflow based pipelines
nextflow-io/nextflow
A DSL for data-driven computational pipelines
Opentrons/opentrons
Software for writing protocols and running them on the Opentrons Flex and Opentrons OT-2
galaxyproject/galaxy
Data intensive science for everyone.
subzeroid/instagrapi
🔥 The fastest and powerful Python library for Instagram Private API 2024
lh3/bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
rstudio/bslib
Tools for theming Shiny and R Markdown via Bootstrap 3, 4, or 5.
abschneider/StrainHub
Welcome to the StrainHub Repo - Files and Data - StrainHub Online:
openai/gym
A toolkit for developing and comparing reinforcement learning algorithms.
catppuccin/catppuccin
😸 Soothing pastel theme for the high-spirited!
w-korani/SNP-ML
SNP-ML is A machine learning dependent tool for SNP calling in polyploidy organisms
mikexcohen/LinAlg4DataScience
Code that accompanies the book "Linear Algebra for Data Science"
paypal/data-contract-template
Template for a data contract used in a data mesh.
cube-js/cube
📊 Cube — The Semantic Layer for Building Data Applications