jonasscheid
PhD student currently focusing on immunopeptidomics pipeline development 👨🏼💻 🧬
Peptide-based ImmunotherapyTübingen, Germany
Pinned Repositories
bioconda-recipes
Conda recipes for the bioconda channel.
easypqp
EasyPQP: Simple library generation for OpenSWATH
epitopeprediction-2
A bioinformatics best-practice analysis pipeline for epitope prediction and annotation
epytope
Python-based framework for computational immunomics
mhcquant
Identify and quantify MHC eluted peptides from mass spectrometry raw data
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
ms2rescore
Modular and user-friendly platform for AI-assisted rescoring of peptide identifications
multi-package-containers
Testing building mulled containers for multi-requirement tools.
epitopeprediction
A bioinformatics best-practice analysis pipeline for epitope prediction and annotation
mhcquant
Identify and quantify MHC eluted peptides from mass spectrometry raw data
jonasscheid's Repositories
jonasscheid/bioconda-recipes
Conda recipes for the bioconda channel.
jonasscheid/easypqp
EasyPQP: Simple library generation for OpenSWATH
jonasscheid/epitopeprediction-2
A bioinformatics best-practice analysis pipeline for epitope prediction and annotation
jonasscheid/epytope
Python-based framework for computational immunomics
jonasscheid/mhcquant
Identify and quantify MHC eluted peptides from mass spectrometry raw data
jonasscheid/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
jonasscheid/ms2rescore
Modular and user-friendly platform for AI-assisted rescoring of peptide identifications
jonasscheid/multi-package-containers
Testing building mulled containers for multi-requirement tools.
jonasscheid/multiomics-configs
Set of config files for species, taxonomies, etc
jonasscheid/OpenMS
The codebase of the OpenMS project
jonasscheid/OpenMS-THIRDPARTY
External binary dependencies (e.g. search engine binaries) packaged in installers
jonasscheid/psm_utils
Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
jonasscheid/students
jonasscheid/test-datasets
Test data to be used for automated testing with the nf-core pipelines
jonasscheid/website
Code and files for the main nf-core website.