jonatanalvelid
Postdoc in the Eggeling lab at the Leibniz IPHT, working on microscopy automation and image analysis
Leibniz IPHTJena, Germany
Pinned Repositories
ImSwitch
ImSwitch is a software solution in Python that aims at generalizing microscope control by providing a solution for flexible control of multiple microscope modalities.
etSTED-widget
Generalization, including simulation, of the event-triggered widget provided in ImSwitch, for implementation in other python-based microscope control software.
etSTED-widget-base
Generalized event-triggered widget for implementation in other python-based microscope control software.
etSTEDanalysis
Analysis code for event-triggered STED data.
FocusLock
Focus lock control for microscopes
ImmunocellReceptorAnalysis
Image analysis for STED imaging of PD1 receptors in immunocells. Analysing receptor cluster density, nearest neighbour distances and cluster sizes.
ImSwitch-etSTED
A version of ImSwitch used for event-triggered STED imaging.
ImSwitchPS
Mitography
Image analysis for STED imaging of mitochondria and the actin cytoskeleton in neurons. Quantifying the morphology of mitochondria, local actin network parameters, and locational parameters.
Tempesta-RedSTED
The Tempesta (github.com/TestaLab/Tempesta) version used for the RedSTED, in the TestaLab @SciLifeLab.
jonatanalvelid's Repositories
jonatanalvelid/Tempesta-RedSTED
The Tempesta (github.com/TestaLab/Tempesta) version used for the RedSTED, in the TestaLab @SciLifeLab.
jonatanalvelid/etSTED-widget-base
Generalized event-triggered widget for implementation in other python-based microscope control software.
jonatanalvelid/etSTEDanalysis
Analysis code for event-triggered STED data.
jonatanalvelid/Mitography
Image analysis for STED imaging of mitochondria and the actin cytoskeleton in neurons. Quantifying the morphology of mitochondria, local actin network parameters, and locational parameters.
jonatanalvelid/etSTED-widget
Generalization, including simulation, of the event-triggered widget provided in ImSwitch, for implementation in other python-based microscope control software.
jonatanalvelid/FocusLock
Focus lock control for microscopes
jonatanalvelid/ImmunocellReceptorAnalysis
Image analysis for STED imaging of PD1 receptors in immunocells. Analysing receptor cluster density, nearest neighbour distances and cluster sizes.
jonatanalvelid/ImSwitch-etSTED
A version of ImSwitch used for event-triggered STED imaging.
jonatanalvelid/ImSwitchPS
jonatanalvelid/qdsted-analysis-simulations
Analysis and simulation scripts for STED images with far red-shifted QDs.
jonatanalvelid/mitography-public
Mitography analysis scripts for analysing mitochondria and related structures in STED microscopy images.
jonatanalvelid/Tempesta
Control software for Testa Lab's MoNaLISA fluorescence microscope @SciLifeLab. Tempesta is an adaption of Tormenta (github.com/fedebarabas/tormenta)