Pinned Repositories
book
Compiled and pretty version of labs
cancer-deep-learning-model
Keras Deep Learning neural network model for University of Wisconsin Cancer data that uses the Integrated Variants library to explain predictions made by a trained model
Cancer-Research-Machine-Learning
Research work in the area of cancer diagnosis using machine learning with R
CYCLOPS
Cyclic Ordering by Periodic Structure
Dentate-Granule-Cell-Model
This detailed and robust compartmental model accompanies the manuscript Beining et al (2017): T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells. eLife
gatk
Official code repository for GATK versions 4 and up
GenomicDataCommons
Provide R access to the NCI Genomic Data Commons portal.
GenomicUtilities
icgc_rnaseq_align
msu_ngs2015
DE analysis module for Week3
jonathanTrinE's Repositories
jonathanTrinE/test_demo
jonathanTrinE/Dentate-Granule-Cell-Model
This detailed and robust compartmental model accompanies the manuscript Beining et al (2017): T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells. eLife
jonathanTrinE/T2N
T2N is an extension of the TREES toolbox providing an interface between Matlab and the compartmental modeling environment NEURON. It was published in (and should be cited this way): Beining M, Mongiat, LA, Schwarzacher SW, Cuntz H, Jedlicka P: T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells. eLife 2017; 6:e26517
jonathanTrinE/treestoolbox
TREES toolbox
jonathanTrinE/testRepo
this is a test repo
jonathanTrinE/gatk
Official code repository for GATK versions 4 and up
jonathanTrinE/TimeSignatR
TimeSignature R package
jonathanTrinE/SoptSC
SOptSC for single cell data analysis
jonathanTrinE/seurat
R toolkit for single cell genomics
jonathanTrinE/SysBioShortCourse
jonathanTrinE/GenomicDataCommons
Provide R access to the NCI Genomic Data Commons portal.
jonathanTrinE/book
Compiled and pretty version of labs
jonathanTrinE/stat-learning
Notes and exercise attempts for "An Introduction to Statistical Learning"
jonathanTrinE/org-docs
jonathanTrinE/Cancer-Research-Machine-Learning
Research work in the area of cancer diagnosis using machine learning with R
jonathanTrinE/GenomicUtilities
jonathanTrinE/Workflow_of_ChIPSeq
R code in workflow of chip-seq analysis
jonathanTrinE/cancer-deep-learning-model
Keras Deep Learning neural network model for University of Wisconsin Cancer data that uses the Integrated Variants library to explain predictions made by a trained model
jonathanTrinE/CYCLOPS
Cyclic Ordering by Periodic Structure
jonathanTrinE/msu_ngs2015
DE analysis module for Week3
jonathanTrinE/icgc_rnaseq_align
jonathanTrinE/pkg-xppaut
Debian packaging of xppaut