jonathanking
Working to advance medical science with artificial intelligence. CMU/Pitt Comp Bio PhD Program.
Pittsburgh, PA
Pinned Repositories
bitcoinHFT
A bitcoin high frequency trading program.
ebola-agents
An Agent Based Approach to Modeling Ebola Outbreak
instaGAN_captioner
A CNN/DCGAN Encoder ---> RNN Decoder model for captioning instagram food photos
openfold
A fork of OpenFold that allows AF2 training with force fields
pdbfixer
PDBFixer fixes problems in PDB files
protein-transformer
Predicting protein structure through sequence modeling
sidechainnet
An all-atom protein structure dataset for machine learning.
jonathanking's Repositories
jonathanking/sidechainnet
An all-atom protein structure dataset for machine learning.
jonathanking/protein-transformer
Predicting protein structure through sequence modeling
jonathanking/instaGAN_captioner
A CNN/DCGAN Encoder ---> RNN Decoder model for captioning instagram food photos
jonathanking/bitcoinHFT
A bitcoin high frequency trading program.
jonathanking/ebola-agents
An Agent Based Approach to Modeling Ebola Outbreak
jonathanking/openfold
A fork of OpenFold that allows AF2 training with force fields
jonathanking/pdbfixer
PDBFixer fixes problems in PDB files
jonathanking/alphafold_non_docker
Open source code for AlphaFold.
jonathanking/BioPython-A3MIO
A3M/A2M support for BioPython
jonathanking/angletransformer
jonathanking/char-rnn
Multi-layer Recurrent Neural Networks (LSTM, GRU, RNN) for character-level language models in Torch
jonathanking/cheeseboardpizza
What's the Cheese Board Pizza Today?
jonathanking/cmu-nmt-fall19
An implementation of NMT methods for 11-731 @ CMU
jonathanking/docs
Documentation for the Koes Research Group. Most likely woefully inadequate.
jonathanking/docs-1
TensorFlow documentation
jonathanking/gffcompare
classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
jonathanking/jonathanking.github.io
View my personal website at
jonathanking/leadit
Under development
jonathanking/molssi-practice
Learning best practices with python
jonathanking/nmt
TensorFlow Neural Machine Translation Tutorial
jonathanking/openbabel
Open Babel is a chemical toolbox designed to speak the many languages of chemical data.
jonathanking/openmm
OpenMM is a toolkit for molecular simulation using high performance GPU code.
jonathanking/OpenMMforSideChainNet
jonathanking/openprotein
A PyTorch framework for prediction of tertiary protein structure
jonathanking/periodic-table
jonathanking/proteinnet
Standardized data set for machine learning of protein structure
jonathanking/rdkit-scripts
A collection of cheminformatics scripts that use rdkit
jonathanking/rgn
Recurrent Geometric Networks for end-to-end differentiable learning of protein structure
jonathanking/SpotMenu
Spotify and iTunes in your menu bar
jonathanking/timeglass
Simple and unobtrusive menu bar timer for macOS.