Pinned Repositories
AgarAI
Reinforcement Learning for Agar.io
AgarLE
Agar.io OpenAI Gym Learning Environment
Algorithms
A collection of algorithm and data structure implementations
BraTS18-Project
Brain tumor segmentation using fully-convolutional deep neural networks.
fht-jax
Fast Hadamard Transform CUDA bindings for JAX
Heat-Stroke-Prediction
Real-time heat stroke prediction via wearable sensors (Bioengineering Senior Capstone 2016-17)
HumanProteinAtlas
Protein localization in cell microscopy images Kaggle competition
Lisp
Lisp interpreter written in C
PhaMers
A bioinformatic tool for identifying bacteriophages using machine learning and k-mers
quantum
Quantum computing simulation Jax.
jondeaton's Repositories
jondeaton/BraTS18-Project
Brain tumor segmentation using fully-convolutional deep neural networks.
jondeaton/AgarLE
Agar.io OpenAI Gym Learning Environment
jondeaton/Heat-Stroke-Prediction
Real-time heat stroke prediction via wearable sensors (Bioengineering Senior Capstone 2016-17)
jondeaton/Lisp
Lisp interpreter written in C
jondeaton/PhaMers
A bioinformatic tool for identifying bacteriophages using machine learning and k-mers
jondeaton/HumanProteinAtlas
Protein localization in cell microscopy images Kaggle competition
jondeaton/Algorithms
A collection of algorithm and data structure implementations
jondeaton/quantum
Quantum computing simulation Jax.
jondeaton/AgarAI
Reinforcement Learning for Agar.io
jondeaton/BigGene
Development environment for Big Data Genomics
jondeaton/fwht-jax
Fast Walsh-Hadamard Transform CUDA bindings for JAX
jondeaton/adam
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
jondeaton/agar.io-clone
Agar.io clone written with Socket.IO and HTML5 canvas
jondeaton/avocado
A Variant Caller, Distributed. Apache 2 licensed.
jondeaton/diffusion-guidance
Diffusion guidance for Batch Bayesian Optimization
jondeaton/e3nn-jax
jondeaton/equinox
Callable PyTrees and filtered transforms => neural networks in JAX. https://docs.kidger.site/equinox/
jondeaton/esmjax
ESM2 protein language models in JAX/Flax
jondeaton/hyena-dna
Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena
jondeaton/jax
Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more
jondeaton/jondeaton.github.io
Personal website
jondeaton/kmer-counter
Distributed k-mer counter for High Performance Computing using MPI
jondeaton/mamba
jondeaton/OLD_jondeaton.github.io
Jon Deaton's personal webpage
jondeaton/Reddit-Analyzer
Analyzes reddit data
jondeaton/reddit-processing
preprocessing of Reddit data
jondeaton/slip
SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.
jondeaton/snap
Stanford Network Analysis Platform (SNAP) is a general purpose network analysis and graph mining library.
jondeaton/TensorflowSandbox
Playground for deep learning
jondeaton/TransformerEngine
A library for accelerating Transformer models on NVIDIA GPUs, including using 8-bit floating point (FP8) precision on Hopper and Ada GPUs, to provide better performance with lower memory utilization in both training and inference.