jordache-ramjith

Andolina2022

This repository includes the R code and data used in the analysis for the main manuscript of the paper. The cleaned data file consists of the data for only the 104 incident infections used. The ped.RDS file is an R data file for the piece-wise exponential data formulation of the survival data for the competing risks analysis. The descriptives file consists of all descriptive analyses conducted in the study whether included or not. The gametocyte incidence file consists of the R code for the competing risks analysis for gametocyte incidence and malaria clearance. The Clearance Kaplan-Meier is the file used to capture the Kaplan-Meier of the time to clearance of parasites (Table 2). The parasite density, gametocyte density, gametocyte fraction file are the R codes for the longitudinal non-linear mixed effects models and should be executed in that order. .

Double-interval-censored-competing-risks

The R code for the function to analyze the data using all methods described in Ramjith et al. (2022) and the simulation generating code, the simulation results for all scenarios, and the malaria data used in the study.

gicsurv

A shiny app for analyzing generalized interval-censoring survival data. A dataset can have exact times, right-censored times, interval-censored times, double-interval-censored times and any combination of the above.

PAMM

Simulation files including R code

Project-1

jordache-ramjith/Double-interval-censored-competing-risks

The R code for the function to analyze the data using all methods described in Ramjith et al. (2022) and the simulation generating code, the simulation results for all scenarios, and the malaria data used in the study.

jordache-ramjith/Andolina2022

This repository includes the R code and data used in the analysis for the main manuscript of the paper. The cleaned data file consists of the data for only the 104 incident infections used. The ped.RDS file is an R data file for the piece-wise exponential data formulation of the survival data for the competing risks analysis. The descriptives file consists of all descriptive analyses conducted in the study whether included or not. The gametocyte incidence file consists of the R code for the competing risks analysis for gametocyte incidence and malaria clearance. The Clearance Kaplan-Meier is the file used to capture the Kaplan-Meier of the time to clearance of parasites (Table 2). The parasite density, gametocyte density, gametocyte fraction file are the R codes for the longitudinal non-linear mixed effects models and should be executed in that order. .

jordache-ramjith/gicsurv

A shiny app for analyzing generalized interval-censoring survival data. A dataset can have exact times, right-censored times, interval-censored times, double-interval-censored times and any combination of the above.

jordache-ramjith/PAMM

Simulation files including R code

jordache-ramjith/Project-1