jorgecnavarrom
e-learning developer at Wageningen University and Research. Fungal secondary metabolites enthusiast
Netherlands
Pinned Repositories
bgc_micro_utilities
Simple scripts related to genome mining
BGClib
Methods and classes to support Biosynthetic Gene Cluster analysis
bioconda-recipes
Conda recipes for the bioconda channel.
fetch_context_gbk
Extract a locus around a CDS feature in a GenBank file
git-workshop_1
Repository for the BIF GIT workshop
keep_longest_CDS
Simple script to detect overlaps in CDS features in GenBank files and remove the smallest ones
MycoCosm_genome_downloader
Tool to download fungal genomes (fasta + gff) files from JGI's MycoCosm
ProteinId2Locus
Queries NCBI with a Protein Id (or a list) and retrieves its genomic context in GenBank format
BiG-SCAPE
Similarity networks of biosynthetic gene clusters
FNP_aux_scripts
Small scripts to help with fungal biosynthetic gene cluster mining
jorgecnavarrom's Repositories
jorgecnavarrom/BGClib
Methods and classes to support Biosynthetic Gene Cluster analysis
jorgecnavarrom/bgc_micro_utilities
Simple scripts related to genome mining
jorgecnavarrom/bioconda-recipes
Conda recipes for the bioconda channel.
jorgecnavarrom/fetch_context_gbk
Extract a locus around a CDS feature in a GenBank file
jorgecnavarrom/git-workshop_1
Repository for the BIF GIT workshop
jorgecnavarrom/keep_longest_CDS
Simple script to detect overlaps in CDS features in GenBank files and remove the smallest ones
jorgecnavarrom/MycoCosm_genome_downloader
Tool to download fungal genomes (fasta + gff) files from JGI's MycoCosm
jorgecnavarrom/notebooks
jorgecnavarrom/ProteinId2Locus
Queries NCBI with a Protein Id (or a list) and retrieves its genomic context in GenBank format
jorgecnavarrom/walkthroughs
Interactive jupyter notebooks
jorgecnavarrom/python-template-mini
A simple template repository for python projects