Pinned Repositories
AmuseDBExplorer
AMUSE database explorer: arabidopsis thaliana mucilage natural variability
ansible-role-bbric-archive
ansible role for bbric archive
bash-common
Bash common bioinformatics library
classyfireR
R Interface to the ClassyFire REST API
contigLink
Assembly contigs link builder R package
deploy_archive_ips2
deploy bbric archive at ips2 epitrans platform
docker-nginx
Docker resources to build nginx image
docker-php-fpm
Docker resources to build php-fpm image
mitology-pipeline
Pipeline for plant organites (chloroplast and mitochondrion) assembly
pgmodeler
Docker resources to build pgmodeler image
jos4uke's Repositories
jos4uke/viticall_nf
Variant calling nextflow pipeline for Grapedia " Tinkering with GRAPEDIA Training School: a modern take on grapevine data analysis" (DATE: 26-28 June 2023 VENUE: FEM | Fondazione Edmund Mach, Via E. Mach 1, 38098 San Michele all’Adige, Trento, Italy)
jos4uke/mitology-pipeline
Pipeline for plant organites (chloroplast and mitochondrion) assembly
jos4uke/pgmodeler
Docker resources to build pgmodeler image
jos4uke/AmuseDBExplorer
AMUSE database explorer: arabidopsis thaliana mucilage natural variability
jos4uke/ansible-role-bbric-archive
ansible role for bbric archive
jos4uke/bash-common
Bash common bioinformatics library
jos4uke/classyfireR
R Interface to the ClassyFire REST API
jos4uke/contigLink
Assembly contigs link builder R package
jos4uke/deploy_archive_ips2
deploy bbric archive at ips2 epitrans platform
jos4uke/docker-nginx
Docker resources to build nginx image
jos4uke/docker-php-fpm
Docker resources to build php-fpm image
jos4uke/docker-postgresql
Dockerfile to build a PostgreSQL container image which can be linked to other containers.
jos4uke/dotfiles
My dotfiles on the cloud
jos4uke/dreamFileMaker
Build custom variant identifier from one effect per line vcf
jos4uke/fileMatch
Match custom variant identifier in multiple dreamFilemaker formatted files
jos4uke/FROGS
FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.
jos4uke/getSeqFlankBlatHit
Getting sequences flanking blat hits
jos4uke/git_for_humans
Git for humans
jos4uke/qc4rnaseq
Estimer a posteriori la qualité des banques de RNASeq, à partir des données de comptage
jos4uke/qc4rnaseq_run
Script R pour estimer à posteriori la qualité des banques RNA-seq à partir des données de comptage (package R qc4rnaseq)
jos4uke/rna-seq-qc
Rna-seq pipeline, From FASTQ to differential expression analysis...
jos4uke/rnaseq_r_utils
RNAseq R utils scripts
jos4uke/sci
jos4uke/seek
For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.
jos4uke/sequana_eval
Evaluate sequana
jos4uke/shiny
Docker resources to build shiny server image
jos4uke/shiny_tutorial
Learn how to build a shiny application
jos4uke/single-meiosis-pipeline
Single Meiosis Pipeline
jos4uke/snakemake-workflows
The Snakemake Workflow Repository is a collection of reusable and modularized Snakemake rules and workflows. The provided code should also serve as a best-practices guide of how to build production ready workflows with Snakemake.
jos4uke/Sparc