josefin-werme/LAVA

Issues

• Global rg and local rg

  #79 opened 17 days ago by dqq0404
  0

• All estimates are NA

  #78 opened 23 days ago by Huifang-Xu
  0

• GWAS dataset filtering for LAVA

  #77 opened 2 months ago by zara03
  1

• trouble processing loci for analysis

  #76 opened 3 months ago by SBNeuro1
  0

• Unaligned SNPs and sumstat loading in LAVA

  #75 opened 4 months ago by SBNeuro1
  4

• Invalid target phenotype specified

  #74 opened 5 months ago by dqq0404
  2

• total N or effect N

  #73 opened 5 months ago by dqq0404
  2

• How to analyze all loci togather in R

  #68 opened 5 months ago by zara03
  1

• HG38 BUILD LOCUS FILE

  #67 opened 5 months ago by zara03
  3

• about the WARNNINGS

  #72 opened 6 months ago by Licun1
  1

• run.multireg(param.lim) Warning: Estimates too far out of bounds

  #71 opened 6 months ago by EPTissink
  2

• Can rg be 1?

  #69 opened 6 months ago by dqq0404
  2

• LD BLOCKS

  #70 opened 6 months ago by zara03
  0

• Error from “blocks_s2500_m25_f1_w200.GRCh37_hg19.locfile”

  #66 opened 7 months ago by lzxwsq
  1

• Discordant results between LAVA and LDSC

  #65 opened 7 months ago by actright7
  2

• Error: Invalid target phenotype specified

  #63 opened 8 months ago by zakathornton
  1

• Negative variance estimate for all phenotypes

  #62 opened 9 months ago by chenyangjjj
  0

• Couldn't open input file

  #61 opened 9 months ago by zakathornton
  0

• Unable to run particular target in run.uni.bivar

  #42 opened 2 years ago by RubyWoodward
  2

• Estimate global h2 and rg

  #60 opened a year ago by PDRohde
  1

• How can I analysis the entire genome

  #59 opened a year ago by littlehegemon
  1

• There is a question about the analysis process.

  #58 opened a year ago by Zhangzzzzzy
  2

• vignettes/data/data/asthma.sumatats.txt can not be shown

  #57 opened a year ago by XuanxiaoLi
  2

• Ref: Model does not converge #52

  #54 opened a year ago by ancolococky
  3

• Partial correlations

  #53 opened a year ago by NicolasC0
  2

• r2.lower, r2.upper, lo.lower and lo.upper are NA

  #48 opened a year ago by shenlan17
  1

• Zero p-values in run.univ at non GWAS significant loci.

  #47 opened a year ago by gouthamatla
  1

• installation problem

  #43 opened a year ago by biostat0903
  1

• unable to compile lava-partitioning

  #56 opened a year ago by catheriz
  0

• No valid N header in sumstats file for phenotype

  #55 opened a year ago by catheriz
  0

• Model does not converge

  #52 opened a year ago by karpat90
  1

• Regarding sample size for case -control GWAS

  #51 opened a year ago by karpat90
  3

• All r2.lower, r2.upper, lo.lower and lo.upper are NA

  #31 opened 2 years ago by zh-zhang1984
  3

• Unable to run with target phenotype if negative variance present in any loci.

  #44 opened a year ago by RubyWoodward
  6

• locus file problem

  #46 opened a year ago by cwnag-c
  2

• Errors in the analysis of conditional genetic relations

  #45 opened a year ago by zsf123525
  2

• process.locus error: missing value where TRUE/FALSE needed

  #40 opened a year ago by laurendonoghue
  0

• Negative variance issue

  #41 opened a year ago by henry-jo98
  1

• SNP filter

  #39 opened a year ago by AlexYiLuo
  4

• Retrieve genes from a locus by knowing the chromosome position

  #36 opened a year ago by zh-zhang1984
  1

• Multiple regression analysis error message

  #32 opened a year ago by actright7
  1

• Possibility to use a less strict P value threshold for univariate analysis

  #38 opened 2 years ago by liviamotu
  2

• Error from process.locus() for test data analysis

  #37 opened 2 years ago by Guo00158
  1

• Error in if (any(out.of.bounds)) : missing value where TRUE/FALSE needed

  #35 opened 2 years ago by bobbykoeleman
  2

• redefine loci based on the 1000G data

  #34 opened 2 years ago by sherryfan030
  1

• Error in partial correlation analysis

  #27 opened 2 years ago by IsabelaVelloso
  2

• devtools::install_github does not install vignettes

  #26 opened 2 years ago by JoniColeman
  1

• About warnings and errors in the analysis of tutorial data

  #30 opened 2 years ago by ryo-kurosawa
  2

• multiple loci at a time

  #29 opened 2 years ago by frotsko
  1

• Output headers

  #28 opened 2 years ago by IsabelaVelloso
  1