/SC3

Super Concise Single Cell Snp Caller

Primary LanguageShellMIT LicenseMIT

(SC)3 Super Concise Single Cell Snp Caller!

Based on SC3 repo of previous NCBI Hackathon,

  • Customized for our project SCRVV of NCBI Hackathon on 1/22-1/24, 2018.
  • Intended to make it work on ubuntu without SLURM workload manager.
  • Remove many files not used.
  • To generate the result: run ./SC3.sh PRJEB15401 diabetes ./test/ when you are at the root directory of this repo.
  • It will pull a customized version of PSST, which also one of products of previous NCBI Hackathon.