joshuagryphon
Biologist, tinkerer, obsessed with crossword puzzles, and interested in new challenges.
Ginkgo BioworksBoston, MA, USA
Pinned Repositories
twobitreader
A fast python class for reading 2-bit files (used by UCSC genome browser)
minihmm
Toy Python library for hidden Markov models
minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
plastid
Position-wise analysis of sequencing and genomics data
pysam
Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.
rcfiles
configuration files
twobitreader
A fast python class for reading 2-bit files (used by UCSC genome browser)
pysam
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
argdoc
joshuagryphon's Repositories
joshuagryphon/plastid
Position-wise analysis of sequencing and genomics data
joshuagryphon/minihmm
Toy Python library for hidden Markov models
joshuagryphon/minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
joshuagryphon/pysam
Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.
joshuagryphon/rcfiles
configuration files
joshuagryphon/twobitreader
A fast python class for reading 2-bit files (used by UCSC genome browser)