joshualiuxu
Ph.D in Institute of Soil Science, Chinese Academy of Sciences Work in Nanjing Agricultural University
Nanjing Agricultural UniversityNanjing
Pinned Repositories
awesome-r-dataviz
Curated resources about Data Visualization, Drawing & Publishing in R
bookdown
Authoring Books and Technical Documents with R Markdown
broom
Convert statistical analysis objects from R into tidy format
ComplexHeatmap
Make Complex Heatmaps
DataEditR
An Interactive R Package for Viewing, Entering Filtering and Editing Data
EasyMetagenome
Easy Metagenome Pipeline 2019 (1.0)
easystats
:milky_way: The R easystats-project
Network-motifs-explain-soil-organism-coexistence-and-biodiversity
qcmi
To explore biotic associations of microbes at the community level. See the detailed package tutorial (https://joshualiuxu.github.io/).
Tools-Microbiome-Analysis
A list of R environment based tools for marker gene microbiome data exploration, statistical analysis and visualization
joshualiuxu's Repositories
joshualiuxu/qcmi
To explore biotic associations of microbes at the community level. See the detailed package tutorial (https://joshualiuxu.github.io/).
joshualiuxu/Network-motifs-explain-soil-organism-coexistence-and-biodiversity
joshualiuxu/awesome-r-dataviz
Curated resources about Data Visualization, Drawing & Publishing in R
joshualiuxu/bookdown
Authoring Books and Technical Documents with R Markdown
joshualiuxu/broom
Convert statistical analysis objects from R into tidy format
joshualiuxu/ComplexHeatmap
Make Complex Heatmaps
joshualiuxu/DataEditR
An Interactive R Package for Viewing, Entering Filtering and Editing Data
joshualiuxu/EasyMetagenome
Easy Metagenome Pipeline 2019 (1.0)
joshualiuxu/easystats
:milky_way: The R easystats-project
joshualiuxu/fixest
Fixed-effects estimations
joshualiuxu/FUNGuild
FUNGuild: parsing OTUs into functional guilds
joshualiuxu/ggClusterNet
Microbial ecological network visualization clustering
joshualiuxu/ggsignif
Easily add significance brackets to your ggplots
joshualiuxu/google-research
Google Research
joshualiuxu/greta
simple and scalable statistical modelling in R
joshualiuxu/joshualiuxu
Config files for my GitHub profile.
joshualiuxu/joshualiuxu.github.io
joshualiuxu/microeco
An R package for data analysis in microbial community ecology
joshualiuxu/microViz
R package for microbiome data visualization. Uses phyloseq, vegan and tidyverse. See website link for docs with visual examples. Docker image available.
joshualiuxu/modelbased
:chart_with_upwards_trend: Estimate effects, contrasts and means based on statistical models
joshualiuxu/NST
Normalized Stochasticity Ratio in community assembly
joshualiuxu/rstanarm
rstanarm R package for Bayesian applied regression modeling
joshualiuxu/statsExpressions
Expressions and dataframes with statistical details 📉 📜🔣✅
joshualiuxu/SydneyPhyloWorkshop
Sydney Phylogenetics Workshop
joshualiuxu/test
test for creating the repo
joshualiuxu/yardstick
Tidy methods for measuring model performance
joshualiuxu/beem-static
📦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models
joshualiuxu/Virome
joshualiuxu/VirSorter2
customizable pipeline to identify viral sequences from (meta)genomic data
joshualiuxu/ViWrap
A wrapper to identify, bin, classify, and predict host-viral relationship for viruses