/khmer

in-memory k-mer counting

Primary LanguageC

Welcome to khmer, k-mer counting & filtering FTW!

NOTE:

khmer is *pre-publication* and *research* software, so please keep in
mind that (a) the code may have undiscovered bugs in it, (b) you
should cite us, and (c) you should get in touch if you need to cite
us, as we are writing up the project.

INSTRUCTIONS:

'make all' to build.

'cd python && python setup.py test' to test (OR set PYTHONPATH, 'make test').

'make doc' to build docs.  You'll need Sphinx installed.

khmer is under the BSD license; see doc/LICENSE.txt.  Distribution,
modification and redistribution, incorporation into other software,
and pretty much everything else is allowed.

CTB 11/2010.