Pinned Repositories
Single-cell-RNA-seq
Workflows for handling automatic single-cell RNA seq analysis
aozan
An automated post sequencing data processing pipeline for Illumina HiSeq
dockerfiles
easy-contrasts-DESeq2
eoulsan
A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)
eoulsan-tools
Additional formats and Galaxy tool files for Eoulsan
toulligQC
A post sequencing QC tool for Oxford Nanopore sequencers
jourdren.github.io
Single_cell_development
Repository gathering first version and assay of functions and modules for Eoulsan
TrimGalore
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
jourdren's Repositories
jourdren/jourdren.github.io
jourdren/Single_cell_development
Repository gathering first version and assay of functions and modules for Eoulsan
jourdren/TrimGalore
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
jourdren/bioconda-recipes
Conda recipes for the bioconda channel.
jourdren/picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.