Pinned Repositories
picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
dockerfiles
eoulsan
A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)
toulligQC
A post sequencing QC tool for Oxford Nanopore sequencers
bioconda-recipes
Conda recipes for the bioconda channel.
jourdren.github.io
picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
Single_cell_development
Repository gathering first version and assay of functions and modules for Eoulsan
TrimGalore
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
dorado
Oxford Nanopore's Basecaller
jourdren's Repositories
jourdren/bioconda-recipes
Conda recipes for the bioconda channel.
jourdren/jourdren.github.io
jourdren/picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
jourdren/Single_cell_development
Repository gathering first version and assay of functions and modules for Eoulsan
jourdren/TrimGalore
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data