jparismorgan/flask_cellcounter

Website using the TrackPy toolkit to count hemocytometer cells.

Cell Counter

Count cells on a hemocytometer plate. Developed for use at the Bebout Lab, NASA Ames.

Running

To use, simply upload your selected files and set your classification parameters.

• CLI: pip install -r requirements.txt, then python cell-cli.py
• (No longer hosted) Website: https://rapid-cell-counter.herokuapp.com/

Example

Before:

After:

Acknowledgements

This site uses the TrackPy - Particle Tracking Toolkit.

Future plans

The next version of this site will use a least squares approach to iteratively determining the best fit parameters.