Pinned Repositories
ecotyper
EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.
segger_dev
a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challenge of accurately segmenting individual cells in complex imaging datasets, leveraging a unique approach based on graph neural networks (GNNs).
sopa
Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / etc)
CytoCommunity
A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from cell phenotypes.
TESLA
Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA
SpatialInferCNV
Clone Calling from Visium Spatial Transcriptomics of Cancer samples
jpark27's Repositories
jpark27/SpatialInferCNV
Clone Calling from Visium Spatial Transcriptomics of Cancer samples