Pinned Repositories
42_hihh_circos
demo_app
Ruby On Rails demo application
first_app
The first App for the Ruby on Rails Tutorial
genomics-database-test
a test website for the genomics website
guerrero_data_analysis
Files I used when creating the guerrero data analysis
mcsmrt
Microbiome Classifier Pipeline for Pacific Biosciences 16s Data
OMICS
Drexel Medicine OMICS course
ray_assembly
Assemble a genome from Illumina data via the scripts from Josh Mell
rearrange_gbk_from_mauve
Program to rearrange a genbank file after the "move contigs" operation in mauve
rrp_analysis
An analysis suite for the rrp project
jpearl01's Repositories
jpearl01/mcsmrt
Microbiome Classifier Pipeline for Pacific Biosciences 16s Data
jpearl01/rearrange_gbk_from_mauve
Program to rearrange a genbank file after the "move contigs" operation in mauve
jpearl01/ray_assembly
Assemble a genome from Illumina data via the scripts from Josh Mell
jpearl01/guerrero_data_analysis
Files I used when creating the guerrero data analysis
jpearl01/OMICS
Drexel Medicine OMICS course
jpearl01/rrp_analysis
An analysis suite for the rrp project
jpearl01/add_user
Add a new user to the cluster
jpearl01/bam_error_analysis
Calculate position specific differences to the reference
jpearl01/calc_error_from_illumina_assembly
Use bwa, sambama to call variants and find error in an Illumina assembly
jpearl01/calc_pacbio_assembly_stats
script to calculate statistics from pacbio assemblies
jpearl01/calculate_divergence
Calculate the pairwise divergence of a sliding window over an MSA
jpearl01/camplim
Lims for Drexel CAMP
jpearl01/cluster_analysis
Bioruby program to analyze gene cluster (family) distributions in multi-genome comparisons
jpearl01/cluster_features
Ok, this time I'm really making a rails app
jpearl01/cluster_view
Rails app to examine clusters in a web interface
jpearl01/create_hap
Create input for orderedPainting program from fasta MSA
jpearl01/depot
depot
jpearl01/explore_ghost_clusters
Clusters sometimes contain 'ghost' annotations, I want to get more information about them.
jpearl01/family_recipes
A RoR site to store our delightful family recipes.
jpearl01/fsgm
Finite supragenome model from Justin and Robert
jpearl01/gene_clusters_as_genomes_added
Show changes to core and total gene clusters as genomes increase from a gene presence absence matrix
jpearl01/genomics_tools
Tools for calculating various genomics data
jpearl01/get_gene_list_dna
Node app to download the dna sequence of a list of gene names
jpearl01/microbiome_16s_pipeline
Pipeline using Edgar's recommended steps
jpearl01/my_clustergenes
The latest clustgenes programs
jpearl01/pairwise_analysis
Program outputting pairwise gene information from a presence absence matrix
jpearl01/phen2GeneScreen
Phenotype to Genotype Screening of phylogenetic trees
jpearl01/prepare_supragenome_project
Take a list of genbank files, and create the inputs required for a normal supragenome MSA with fasta36
jpearl01/qs_automation
Automate quantstudio positive, negative, indetermined results
jpearl01/roary2R
Convert Rachel's "merged" csv into a long format to be more easily read into R (and other programs)