/strander

Primary LanguagePython

Inferring Library Type from RNA-Seq Data

This docker container uses Salmon to infer the library type from RNA-seq data. The output includes the Salmon library code and an ASCII figure describing the library. This method does not create an alignment file.

Paired-End Sequencing

docker run -it -v $PWD:/data jpfeil/strander:0.1.0 -1 sample-R1.fastq -2 sample-R2.fastq

Single-Read Sequencing

docker run -it -v $PWD:/data jpfeil/strander:0.1.0 -1 sample-R1.fastq